Motif IL_16415.1 Version IL_16415.1 of this group appears in releases 0.7 to 1.4
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-13 | 3-12 | 4-11 | 5-8 | 5-10 | 6-7 | 6-11 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1FJG_031 | 1FJG | 0.0000 | 1 | A | SSU rRNA | G | 683 | A | 684 | G | 685 | U | 686 | A | 687 | G | 688 | * | C | 699 | G | 700 | C | 701 | G | 703 | A | 704 | U | 705 | A | 706 | C | 707 | cWW | ncwW | tSH | tWH | tSs | tHS | cWW | ntsS | |
| 2 | IL_3V2F_084 | 3V2F | 0.6062 | 1 | A | 23S Ribosomal RNA | G | 2154 | G | 2155 | G | 2156 | G | 2157 | A | 2158 | G | 2159 | * | C | 2129 | U | 2130 | G | 2131 | G | 2133 | A | 2134 | A | 2135 | C | 2136 | C | 2137 | ncWW | ncWW | ntHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAGUAG*CGCAGAUAC | 1 |
| CUGUGAACC*GGGGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGUA*GCAGAUA | 1 |
| UGUGAAC*GGGA | 1 |
Release history
| Release | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_16415.1 | Only in the parent motif |
|---|---|---|---|
| IL_31793.1 Compare | IL_1FJG_031 | IL_3V2F_084 |
Children motifs
| Child motif | Common motif instances | Only in IL_16415.1 | Only in the child motif |
|---|---|---|---|
| IL_16415.2 Compare | IL_1FJG_031, IL_3V2F_084 | IL_4BPP_047 |
- Annotations
- Basepair signature
- cWW-L-R-tSH-L-R-tHS-R-R-cWW
- Heat map statistics
- Min 0.61 | Avg 0.30 | Max 0.61
Coloring options: