Motif IL_16415.2 Version IL_16415.2 of this group appears in releases 1.5 to 1.13
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-13 | 3-12 | 4-11 | 5-6 | 5-8 | 5-10 | 6-7 | 6-11 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4BPP_047 | 4BPP | 0.2901 | 1 | A | 18S RRNA | A | 872 | G | 873 | U | 874 | C | 875 | A | 876 | G | 877 | * | C | 888 | U | 889 | U | 890 | G | 892 | A | 893 | U | 894 | U | 895 | U | 896 | cWW | ncWS | ntWH | ntWH | ncSS | tSS | tHS | cWW | tSS | |
| 2 | IL_1FJG_031 | 1FJG | 0.0000 | 1 | A | SSU rRNA | G | 683 | A | 684 | G | 685 | U | 686 | A | 687 | G | 688 | * | C | 699 | G | 700 | C | 701 | G | 703 | A | 704 | U | 705 | A | 706 | C | 707 | cWW | ncWW | tSH | tWH | tSS | tHS | cWW | tSS | ||
| 3 | IL_3V2F_084 | 3V2F | 0.6062 | 1 | A | 23S Ribosomal RNA | G | 2154 | G | 2155 | G | 2156 | G | 2157 | A | 2158 | G | 2159 | * | C | 2129 | U | 2130 | G | 2131 | G | 2133 | A | 2134 | A | 2135 | C | 2136 | C | 2137 | ntSH | ntHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AGUCAG*CUUGGAUUU | 1 |
| GAGUAG*CGCAGAUAC | 1 |
| CUGUGAACC*GGGGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUCA*UUGGAUU | 1 |
| AGUA*GCAGAUA | 1 |
| UGUGAAC*GGGA | 1 |
Release history
| Release | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_16415.2 | Only in the parent motif |
|---|---|---|---|
| IL_16415.1 Compare | IL_1FJG_031, IL_3V2F_084 | IL_4BPP_047 |
Children motifs
| Child motif | Common motif instances | Only in IL_16415.2 | Only in the child motif |
|---|---|---|---|
| IL_16415.3 Compare | IL_1FJG_031, IL_4BPP_047 | IL_3V2F_084 |
- Annotations
- Basepair signature
- cWW-L-R-tSH-tWH-tHS-tSS-tSS-R-cWW
- Heat map statistics
- Min 0.29 | Avg 0.34 | Max 0.62
Coloring options: