Motif IL_17069.2 Version IL_17069.2 of this group appears in releases 3.48 to 3.53
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 1-4 | 1-13 | 2-11 | 3-10 | 3-12 | 4-9 | 5-8 | 6-7 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V9F_065 | 4V9F | 0.2347 | 3 | Kink-turn related | 0 | LSU rRNA | C | 1854 | G | 1855 | C | 1856 | A | 1858 | A | 1859 | U | 1860 | * | A | 1869 | C | 1870 | U | 1871 | G | 1873 | U | 1874 | A | 1875 | G | 1877 | cSs | cWW | tSs | tWW | tHH | tHH | ncWW | cWW |
| 2 | IL_4WF9_069 | 4WF9 | 0.1392 | 3 | Kink-turn related | X | LSU rRNA | U | 1825 | G | 1826 | C | 1827 | A | 1829 | A | 1830 | A | 1831 | * | U | 1840 | G | 1841 | A | 1842 | G | 1844 | U | 1845 | A | 1846 | A | 1848 | cSs | cWW | ntWW | ntHH | ntHH | tHS | cWW | |
| 3 | IL_4Y4O_243 | 4Y4O | 0.0000 | 3 | Kink-turn related (H) | 2A | LSU rRNA | U | 1798 | G | 1799 | C | 1800 | A | 1802 | A | 1803 | C | 1804 | * | G | 1813 | G | 1814 | A | 1815 | G | 1817 | U | 1818 | A | 1819 | A | 1821 | cSs | cWW | tSs | tWW | tHH | tHH | tHS | cWW |
| 4 | IL_5J7L_313 | 5J7L | 0.0664 | 3 | Kink-turn related | DA | LSU rRNA | U | 1798 | G | 1799 | C | 1800 | A | 1802 | A | 1803 | C | 1804 | * | G | 1813 | G | 1814 | A | 1815 | G | 1817 | U | 1818 | A | 1819 | A | 1821 | cSs | cWW | tSs | tWW | tHH | tHH | tHS | cWW |
| 5 | IL_7A0S_065 | 7A0S | 0.1143 | 3 | Kink-turn related | X | LSU rRNA | U | 1789 | G | 1790 | C | 1791 | A | 1793 | A | 1794 | C | 1795 | * | G | 1805 | G | 1806 | A | 1807 | G | 1809 | U | 1810 | A | 1811 | A | 1813 | cSs | cWW | tWW | ntHH | tHH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGCAAAU*ACUCGUACG | 1 |
| UGCUAAA*UGAUGUAUA | 1 |
| UGCGAAC*GGAGGUAUA | 1 |
| UGCAAAC*GGACGUAUA | 1 |
| UGCCAAC*GGACGUAUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GCAAA*CUCGUAC | 1 |
| GCUAA*GAUGUAU | 1 |
| GCGAA*GAGGUAU | 1 |
| GCAAA*GACGUAU | 1 |
| GCCAA*GACGUAU | 1 |
- Annotations
-
- Kink-turn related (4)
- Kink-turn related (H) (1)
- Basepair signature
- cWW-cSS-tSS-tHH-tWW-tHH-tHS-cWW
- Heat map statistics
- Min 0.07 | Avg 0.14 | Max 0.27
Coloring options: