Motif IL_17470.5 Version IL_17470.5 of this group appears in releases 3.54 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 3-9 | 4-8 | 6-7 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V9F_024 | 4V9F | 0.2954 | 2 | tHW-tHW cross-strand stack | 0 | LSU rRNA | G | 892 | C | 893 | A | 895 | C | 896 | A | 897 | C | 899 | * | G | 765 | A | 766 | A | 767 | U | 768 | C | 769 | cWW | tWH | tWH | cWW | |
| 2 | IL_5TBW_028 | 5TBW | 0.1803 | 2 | tHW-tHW cross-strand stack | 1 | LSU rRNA | C | 931 | U | 932 | G | 934 | U | 935 | A | 936 | C | 938 | * | G | 805 | A | 806 | A | 807 | A | 808 | G | 809 | cWW | ntHH | tWH | cWW | |
| 3 | IL_4WF9_021 | 4WF9 | 0.1026 | 2 | tHW-tHW cross-strand stack | X | LSU rRNA | G | 844 | A | 845 | A | 847 | U | 848 | A | 849 | C | 851 | * | G | 719 | A | 720 | A | 721 | A | 722 | C | 723 | cWW | ntWW | ntWW | tWH | cWW |
| 4 | IL_7A0S_015 | 7A0S | 0.0000 | 2 | tHW-tHW cross-strand stack | X | LSU rRNA | G | 812 | A | 813 | A | 815 | U | 816 | A | 817 | C | 819 | * | G | 687 | A | 688 | A | 689 | A | 690 | C | 691 | cWW | ntWW | tWH | cWW | |
| 5 | IL_7RQB_018 | 7RQB | 0.1314 | 2 | tHW-tHW cross-strand stack | 1A | LSU rRNA | G | 799 | A | 800 | A | 802 | U | 803 | A | 804 | C | 806 | * | G | 674 | A | 675 | A | 676 | A | 677 | C | 678 | cWW | tWW | tWH | tWH | cWW |
| 6 | IL_5J7L_260 | 5J7L | 0.1327 | 2 | tHW-tHW cross-strand stack | DA | LSU rRNA | G | 799 | A | 800 | A | 802 | U | 803 | A | 804 | C | 806 | * | G | 674 | A | 675 | A | 676 | A | 677 | C | 678 | cWW | tWW | tWH | tWH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAGAUAGC*GAAAC | 4 |
| GCAACAGC*GAAUC | 1 |
| CUAGUAGC*GAAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGAUAG*AAA | 4 |
| CAACAG*AAU | 1 |
| UAGUAG*AAA | 1 |
Release history
| Release | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 | 3.77 | 3.78 | 3.79 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 | 2023-12-06 | 2024-01-03 | 2024-01-03 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- tHW-tHW cross-strand stack (6)
- Basepair signature
- cWW-R-tHW-tHW-tWW-cWW
- Heat map statistics
- Min 0.08 | Avg 0.15 | Max 0.30
Coloring options: