Motif IL_19389.5 Version IL_19389.5 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 1-6 | 3-4 | 3-5 | 4-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4LCK_008 | 4LCK | 0.6874 | 0 | Other IL | F | T-BOX RIBOSWITCH STEM I | G | 28 | A | 29 | U | 30 | U | 31 | * | A | 77 | C | 78 | cWW | cWW | ||
| 2 | IL_5XTM_005 | 5XTM | 0.7178 | 0 | Major groove platform with intercalated tWH | D | RNA (47-MER) | C | 41 | U | 42 | A | 43 | A | 44 | * | U | 5 | G | 6 | cWW | cSH | ntSH | cWW |
| 3 | IL_1U6B_009 | 1U6B | 0.7108 | 0 | Major groove platform with intercalated tWH | B | 197-MER | C | 147 | U | 148 | A | 149 | A | 150 | * | U | 162 | G | 163 | cWW | cSH | cWW | |
| 4 | IL_4PCJ_003 | 4PCJ | 0.7168 | 0 | Major groove platform with intercalated tWH | A | trCUG-3('5) | C | 8 | U | 9 | A | 10 | A | 11 | * | U | 27 | G | 28 | cWW | cSH | cWW | |
| 5 | IL_5VCI_003 | 5VCI | 0.7566 | 0 | Major groove platform with intercalated tWH | A+B | RNA (22-mer) + RNA (12-mer) | C | 8 | U | 9 | A | 10 | A | 11 | * | U | 4 | G | 5 | cWW | cSH | cWW | |
| 6 | IL_5DCV_006 | 5DCV | 0.7331 | 0 | Major groove platform with intercalated tWH | D | RNA (47-MER) | C | 45 | U | 46 | A | 47 | A | 48 | * | U | 5 | G | 6 | cWW | cSH | ntSH | cWW |
| 7 | IL_8D29_003 | 8D29 | 0.6058 | 1 | C | RNA (34-MER) | C | 21 | C | 22 | C | 23 | U | 25 | * | A | 10 | G | 11 | cWW | ncWW | |||
| 8 | IL_5TBW_126 | 5TBW | 0.0000 | 2 | 1 | LSU rRNA | C | 3225 | A | 3226 | A | 3227 | G | 3229 | * | U | 3258 | G | 3260 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUAA*UG | 5 |
| GAUU*AC | 1 |
| CCCUU*AG | 1 |
| CAACG*UUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UA* | 5 |
| AU* | 1 |
| CCU* | 1 |
| AAC*U | 1 |
- Annotations
-
- Major groove platform with intercalated tWH (5)
- (2)
- Other IL (1)
- Basepair signature
- cWW-L-cSH-cWW
- Heat map statistics
- Min 0.07 | Avg 0.40 | Max 0.77
Coloring options: