#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4break 5 61-63-43-54-5
1 IL_5TBW_1265TBW0.717821 LSU rRNAC3225A3226A3227G3229*U3258G3260cWWcWW
2 IL_8C3A_1338C3A0.691421 LSU rRNAC3190A3191A3192G3194*U3223G3225cWWcWW
3 IL_8D29_0038D290.54091CRNA (34-MER)C21C22C23U25*A10G11cWWncWW
4 IL_5DCV_0065DCV0.12680Major groove platform with intercalated tWHDRNA (47-MER)C45U46A47A48*U5G6cWWcSHntSHcWW
5 IL_1U6B_0091U6B0.10990Major groove platform with intercalated tWHB197-MERC147U148A149A150*U162G163cWWcSHcWW
6 IL_4PCJ_0034PCJ0.09980Major groove platform with intercalated tWHAtrCUG-3('5)C8U9A10A11*U27G28cWWcSHcWW
7 IL_5VCI_0035VCI0.10350Major groove platform with intercalated tWHA+BRNA (22-mer) + RNA (12-mer)C8U9A10A11*U4G5cWWcSHcWW
8 IL_5XTM_0055XTM0.00000Major groove platform with intercalated tWHDRNA (47-MER)C41U42A43A44*U5G6cWWcSHntSHcWW
9 IL_4LCK_0084LCK0.62180Other ILFT-BOX RIBOSWITCH STEM IG28A29U30U31*A77C78cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CUAA*UG5
CAACG*UUG2
CCCUU*AG1
GAUU*AC1
Non-Watson-Crick part of the motif
SequenceCounts
UA*5
AAC*U2
CCU*1
AU*1

Release history

Release3.803.813.823.833.843.853.863.873.88
Date2024-01-312024-02-282024-03-272024-04-242024-05-222024-06-192024-07-172024-08-142024-09-11
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Major groove platform with intercalated tWH (5)
  • (3)
  • Other IL (1)
  • Basepair signature
    cWW-L-cWW-cSH
    Heat map statistics
    Min 0.07 | Avg 0.44 | Max 0.77
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