Motif IL_19668.1 Version IL_19668.1 of this group appears in releases 3.89 to 3.96
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 1-8 | 2-7 | 5-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_6E8U_001 | 6E8U | 0.0000 | 1 | Isolated non-canonical cWW pair | B | RNA (37-MER) | A | 6 | A | 7 | G | 8 | G | 9 | A | 11 | * | U | 30 | G | 31 | U | 32 | cWW | cWW | cWW |
| 2 | IL_3E5C_001 | 3E5C | 0.7631 | 1 | Isolated non-canonical cWW pair | A | SMK box (SAM-III) Riboswitch | A | 27 | G | 28 | A | 29 | G | 31 | C | 32 | * | G | 12 | A | 13 | U | 14 | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AAGGAA*UGU | 1 |
| AGAUGC*GAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGGA*G | 1 |
| GAUG*A | 1 |
Release history
| Release | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 |
|---|---|---|---|---|---|---|---|---|
| Date | 2024-10-09 | 2024-11-06 | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 | 2025-04-23 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Isolated non-canonical cWW pair (2)
- Basepair signature
- cWW-cWW-L-cWW-L
- Heat map statistics
- Min 0.76 | Avg 0.38 | Max 0.76
Coloring options: