Motif IL_19801.1 Version IL_19801.1 of this group appears in releases 0.1 to 0.4
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-3 | 1-10 | 4-10 | 5-6 | 6-9 | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_1MJI_002 | 1MJI | 0.0000 | 0 | C | 5S rRNA fragment | A | 34 | C | 35 | C | 36 | C | 37 | C | 38 | * | G | 44 | A | 45 | A | 46 | C | 47 | U | 48 | ntSW | cWW | cWS | cWW | tSW |
2 | IL_1S72_102 | 1S72 | 0.1950 | 0 | 9 | 5S rRNA | U | 33 | A | 34 | C | 35 | C | 36 | C | 37 | * | G | 43 | A | 44 | A | 45 | C | 46 | A | 47 | cSH | cWW | cWS | cWW | tSW |
3 | IL_3F1H_111 | 3F1H | 0.2284 | 0 | B | 5S RRNA | U | 34 | U | 35 | C | 36 | C | 37 | C | 38 | * | G | 44 | A | 45 | A | 46 | C | 47 | A | 48 | ncSH | cWW | cWS | cWW | tSW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
ACCCC*GAACU | 1 |
UACCC*GAACA | 1 |
UUCCC*GAACA | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
CCC*AAC | 1 |
ACC*AAC | 1 |
UCC*AAC | 1 |
Release history
Release | 0.1 | 0.2 | 0.3 | 0.4 |
---|---|---|---|---|
Date | 2011-12-08 | 2011-12-08 | 2011-12-08 | 2011-12-08 |
Status | New id, no parents | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
Child motif | Common motif instances | Only in IL_19801.1 | Only in the child motif |
---|---|---|---|
IL_70237.1 Compare | IL_1S72_102, IL_1MJI_002 | IL_3F1H_111 | IL_1MJI_004, IL_2QBG_004 |
Coloring options: