#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5break 6 7 8 9 101-31-104-105-66-9
1 IL_1MJI_0021MJI0.00000C5S rRNA fragmentA34C35C36C37C38*G44A45A46C47U48ntSWcWWcWScWWtSW
2 IL_1S72_1021S720.195009 5S rRNAU33A34C35C36C37*G43A44A45C46A47cSHcWWcWScWWtSW
3 IL_3F1H_1113F1H0.22840B5S RRNAU34U35C36C37C38*G44A45A46C47A48ncSHcWWcWScWWtSW

3D structures

Complete motif including flanking bases
SequenceCounts
ACCCC*GAACU1
UACCC*GAACA1
UUCCC*GAACA1
Non-Watson-Crick part of the motif
SequenceCounts
CCC*AAC1
ACC*AAC1
UCC*AAC1

Release history

Release0.10.20.30.4
Date2011-12-082011-12-082011-12-082011-12-08
StatusNew id, no parentsExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

Child motifCommon motif instancesOnly in IL_19801.1Only in the child motif
IL_70237.1
Compare
IL_1S72_102, IL_1MJI_002IL_3F1H_111IL_1MJI_004, IL_2QBG_004
Annotations
  • (3)
  • Basepair signature
    Heat map statistics
    Min 0.19 | Avg 0.14 | Max 0.23
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