Motif IL_21175.1 Version IL_21175.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_5UNE_008 | 5UNE | 0.4173 | 3 | Isolated basepair with bulged bases | A+B | RNA (47-MER) | C | 33 | G | 34 | A | 38 | * | U | 10 | G | 11 | G | 12 | ncWW | ntSH | cWW |
2 | IL_7A0S_112 | 7A0S | 0.3502 | 1 | Y | 5S rRNA | G | 66 | C | 67 | G | 69 | * | C | 19 | A | 20 | C | 21 | ncWW | ncWW | ncWW | |
3 | IL_7DLZ_003 | 7DLZ | 0.3499 | 1 | X | RNA (45-MER) | C | 33 | C | 34 | C | 36 | * | G | 12 | A | 13 | G | 14 | cWW | ncWW | ||
4 | IL_4V9F_097 | 4V9F | 0.3083 | 1 | Isolated non-canonical cWW with bulges | 0 | LSU rRNA | G | 2900 | C | 2901 | C | 2903 | * | G | 2855 | A | 2856 | C | 2857 | cWW | ncWW | cWW |
5 | IL_5ML7_010 | 5ML7 | 0.2318 | 1 | Isolated non-canonical cWW with bulges | B | 23S ribosomal RNA | G | 2196 | C | 2197 | A | 2199 | * | U | 2181 | A | 2182 | C | 2183 | cWW | cWW | cWW |
6 | IL_4PKD_001 | 4PKD | 0.0000 | 1 | Isolated non-canonical cWW with bulges | V | U1 snRNA stem-loops 1 and 2 (55-MER) | A | 86 | U | 87 | C | 89 | * | G | 106 | U | 107 | U | 108 | cWW | cwW | cWW |
7 | IL_5TBW_132 | 5TBW | 0.1435 | 3 | Isolated non-canonical cWW | 1 | LSU rRNA | U | 3373 | U | 3374 | C | 3378 | * | G | 3328 | U | 3329 | A | 3330 | cWW | cwW | cWW |
8 | IL_8C3A_138 | 8C3A | 0.1619 | 3 | Isolated non-canonical cWW (H) | 1 | LSU rRNA | U | 3338 | U | 3339 | C | 3343 | * | G | 3293 | U | 3294 | A | 3295 | cWW | cwW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
UUAAGC*GUA | 2 |
CGGAAA*UGG | 1 |
GCAG*CAC | 1 |
CCAC*GAG | 1 |
GCAC*GAC | 1 |
GCCA*UAC | 1 |
AUAC*GUU | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
CA*A | 3 |
UAAG*U | 2 |
GGAA*G | 1 |
CC*A | 1 |
UA*U | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Isolated non-canonical cWW with bulges (3)
- (2)
- Isolated non-canonical cWW (1)
- Isolated basepair with bulged bases (1)
- Isolated non-canonical cWW (H) (1)
- Basepair signature
- cWW-cWW-cWW
- Heat map statistics
- Min 0.09 | Avg 0.31 | Max 0.93
Coloring options: