#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 5 61-62-53-4
1 IL_5UNE_0085UNE0.41733Isolated basepair with bulged basesA+BRNA (47-MER)C33G34A38*U10G11G12ncWWntSHcWW
2 IL_7A0S_1127A0S0.35021Y 5S rRNAG66C67G69*C19A20C21ncWWncWWncWW
3 IL_7DLZ_0037DLZ0.34991XRNA (45-MER)C33C34C36*G12A13G14cWWncWW
4 IL_4V9F_0974V9F0.30831Isolated non-canonical cWW with bulges0 LSU rRNAG2900C2901C2903*G2855A2856C2857cWWncWWcWW
5 IL_5ML7_0105ML70.23181Isolated non-canonical cWW with bulgesB23S ribosomal RNAG2196C2197A2199*U2181A2182C2183cWWcWWcWW
6 IL_4PKD_0014PKD0.00001Isolated non-canonical cWW with bulgesVU1 snRNA stem-loops 1 and 2 (55-MER)A86U87C89*G106U107U108cWWcwWcWW
7 IL_5TBW_1325TBW0.14353Isolated non-canonical cWW1 LSU rRNAU3373U3374C3378*G3328U3329A3330cWWcwWcWW
8 IL_8C3A_1388C3A0.16193Isolated non-canonical cWW (H)1 LSU rRNAU3338U3339C3343*G3293U3294A3295cWWcwWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
UUAAGC*GUA2
CGGAAA*UGG1
GCAG*CAC1
CCAC*GAG1
GCAC*GAC1
GCCA*UAC1
AUAC*GUU1
Non-Watson-Crick part of the motif
SequenceCounts
CA*A3
UAAG*U2
GGAA*G1
CC*A1
UA*U1

Release history

Release3.88
Date2024-09-11
StatusNew id, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Isolated non-canonical cWW with bulges (3)
  • (2)
  • Isolated non-canonical cWW (1)
  • Isolated basepair with bulged bases (1)
  • Isolated non-canonical cWW (H) (1)
  • Basepair signature
    cWW-cWW-cWW
    Heat map statistics
    Min 0.09 | Avg 0.31 | Max 0.93
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