Motif IL_21200.1 Version IL_21200.1 of this group appears in releases 3.89 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 3-8 | 6-7 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5U3G_001 | 5U3G | 0.1669 | 0 | tSH-tHW | B | Guanidine-I riboswitch | C | 30 | G | 31 | A | 32 | G | 33 | A | 34 | G | 35 | * | C | 6 | U | 7 | A | 8 | G | 9 | cWW | tSH | tHW | cWW |
| 2 | IL_5T83_001 | 5T83 | 0.1304 | 0 | tSH-tHW | A | Guanidine-I riboswitch | C | 42 | A | 43 | A | 44 | G | 45 | A | 46 | G | 47 | * | C | 12 | U | 13 | A | 14 | G | 15 | cWW | tSH | tHW | cWW |
| 3 | IL_7MLW_002 | 7MLW | 0.1544 | 0 | F | Guanidine-I riboswitch | C | 51 | G | 52 | A | 53 | G | 54 | A | 55 | G | 56 | * | C | 7 | U | 8 | A | 9 | G | 10 | cWW | tSH | tHW | cWW | |
| 4 | IL_6CK5_001 | 6CK5 | 0.1098 | 0 | tSH-tHW | A | Guanidine-I riboswitch | C | 45 | G | 46 | A | 47 | G | 48 | C | 49 | G | 50 | * | C | 12 | U | 13 | A | 14 | G | 15 | cWW | tSH | tHW | cWW |
| 5 | IL_6DLR_001 | 6DLR | 0.0000 | 0 | tSH-tHW | A | Guanidine-I riboswitch | C | 45 | A | 46 | A | 47 | G | 48 | U | 49 | G | 50 | * | C | 12 | U | 13 | A | 14 | G | 15 | cWW | tSH | tHW | cWW |
| 6 | IL_6DME_001 | 6DME | 0.1489 | 0 | tSH-tHW | A | ppGpp Riboswitch | C | 40 | A | 41 | A | 42 | G | 43 | C | 44 | G | 45 | * | C | 11 | U | 12 | A | 13 | G | 14 | cWW | tSH | ntWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGAGAG*CUAG | 2 |
| CAAGAG*CUAG | 1 |
| CGAGCG*CUAG | 1 |
| CAAGUG*CUAG | 1 |
| CAAGCG*CUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAGA*UA | 2 |
| AAGA*UA | 1 |
| GAGC*UA | 1 |
| AAGU*UA | 1 |
| AAGC*UA | 1 |
Release history
| Release | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-10-09 | 2024-11-06 | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 | 2025-04-23 | 2025-05-21 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- tSH-tHW (5)
- (1)
- Basepair signature
- cWW-tSH-tHW-L-cWW-L
- Heat map statistics
- Min 0.11 | Avg 0.14 | Max 0.21
Coloring options: