Motif IL_21341.1 Version IL_21341.1 of this group appears in releases 0.5 to 0.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | break | 3 | 4 | 5 | 6 | 1-6 | 2-3 | 2-5 | 4-5 | 4-6 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2AW7_032 | 2AW7 | 0.0000 | 0 | A | G | 597 | U | 598 | * | A | 640 | U | 641 | A | 642 | C | 643 | cWW | cWW | ncSW | cSH | ||
| 2 | IL_1I6U_002 | 1I6U | 0.1092 | 0 | Major groove minor groove platform; mini C-loop | C | G | 12 | U | 13 | * | A | 24 | U | 25 | A | 26 | C | 27 | cWW | cWW | ncSW | cSH | ncSH |
| 3 | IL_1I6U_004 | 1I6U | 0.1130 | 0 | D | G | 12 | U | 13 | * | A | 24 | U | 25 | A | 26 | C | 27 | cWW | cWW | ncSW | cSH | ncSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GU*AUAC | 3 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *UA | 3 |
Release history
| Release | 0.5 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_21341.1 | Only in the parent motif |
|---|---|---|---|
| IL_17977.2 Compare | IL_1I6U_002, IL_1I6U_004 | IL_2AW7_032 | IL_1S03_003, IL_1S72_101, IL_1S03_007, IL_1U9S_004, IL_1FJG_025, IL_1U9S_002, IL_1S72_068, IL_2ZJR_069 |
Children motifs
| Child motif | Common motif instances | Only in IL_21341.1 | Only in the child motif |
|---|---|---|---|
| IL_92027.1 Compare | IL_2AW7_032, IL_1I6U_002, IL_1I6U_004 | IL_1S03_003, IL_1S72_101, IL_1S03_007, IL_1U9S_004, IL_1U9S_005, IL_1U9S_002, IL_2QBG_074, IL_1S72_068, IL_3Q1Q_005, IL_3U5H_091, IL_2ZJR_069, IL_4A1C_006, IL_3U5F_040, IL_4A1B_019, IL_1FJG_025 |
- Annotations
-
- (2)
- Major groove minor groove platform; mini C-loop (1)
- Basepair signature
- Heat map statistics
- Min 0.06 | Avg 0.06 | Max 0.11
Coloring options: