Motif IL_92027.1 Version IL_92027.1 of this group appears in releases 0.6 to 0.6

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)		1		2		3		4	break		5		6	1-3	1-6	2-3	2-4	2-5	2-6	3-6	4-5
1	IL_4A1B_019	4A1B	0.8396	0		1	G	507	A	508	A	509	A	510	*	U	469	C	470		ncWW			ntSH		cWS	cWW
2	IL_1S72_068	1S72	0.0000	0	Major groove minor groove platform; mini C-loop (H)	0	G	1902	U	1903	A	1904	U	1905	*	A	1934	C	1935		cWW						cWW
3	IL_1U9S_002	1U9S	0.4752	1	Major groove intercalation	A	G	111	A	112	A	114	G	115	*	C	228	C	229		cWW						cWW
4	IL_1S72_101	1S72	0.4621	0	Major groove minor groove platform; mini C-loop (H)	9	G	50	A	51	A	52	G	53	*	C	29	C	30		cWW	cSH				cWS	cWW
5	IL_1I6U_004	1I6U	0.4447	0		D	A	24	U	25	A	26	C	27	*	G	12	U	13		cWW	cSH	ncSH			ncWS	cWW
6	IL_1I6U_002	1I6U	0.4405	0	Major groove minor groove platform; mini C-loop	C	A	24	U	25	A	26	C	27	*	G	12	U	13		cWW	cSH	ncSH			ncWS	cWW
7	IL_1FJG_025	1FJG	0.4294	0	Major groove minor groove platform; mini C-loop (H)	A	A	640	U	641	A	642	C	643	*	G	597	U	598		cWW	cSH	ncSH				cWW
8	IL_2QBG_074	2QBG	0.4175	0		B	G	1846	A	1847	A	1848	G	1849	*	C	1893	C	1894		cWW					ncWS	cWW
9	IL_4A1C_006	4A1C	0.4337	0		3	G	48	A	49	A	50	G	51	*	C	28	C	29		cWW					ncWS	cWW
10	IL_3U5H_091	3U5H	0.4859	0		5	C	2196	C	2197	A	2198	G	2199	*	C	2245	G	2246		cWW						cWW
11	IL_1S03_007	1S03	0.5994	0	Major groove minor groove platform; mini C-loop	B	A	12	A	13	A	14	C	15	*	G	37	U	38		cWW	cSH	ncSH	ntWH		ncWS	cWW
12	IL_2AW7_032	2AW7	0.4627	0		A	A	640	U	641	A	642	C	643	*	G	597	U	598		cWW	cSH				ncWS	cWW
13	IL_1S03_003	1S03	0.5711	0	Major groove minor groove platform; mini C-loop	A	A	12	A	13	A	14	C	15	*	G	37	U	38		cWW	cSH	ncSH	ntWH		ncWS	cWW
14	IL_3U5F_040	3U5F	0.8746	0		6	G	802	A	803	A	804	U	805	*	A	746	C	747		cWW	cSH					cWW
15	IL_1U9S_005	1U9S	0.8592	0	Minor groove platform, major groove intercalation	A	C	136	A	137	G	138	C	139	*	G	161	G	162		cWW					ntHS	cWW
16	IL_3Q1Q_005	3Q1Q	0.6109	0		B	C	148	A	149	A	150	G	151	*	C	126	G	127	ncSH	cWW		ncSH		ncWW		cWW
17	IL_1U9S_004	1U9S	0.6718	0	Major groove minor groove platform; mini C-loop	A	C	164	A	165	A	166	G	167	*	C	133	G	134		cWW		cSH	ncWB			cWW
18	IL_2ZJR_069	2ZJR	0.6849	0	Major groove minor groove platform; mini C-loop (H)	X	G	1838	A	1839	A	1840	G	1841	*	C	1876	C	1877		cWW					ntHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GAAG*CC	4
AUAC*GU	4
AAAC*GU	2
CAAG*CG	2
GAAA*UC	1
GUAU*AC	1
GAAAG*CC	1
CCAG*CG	1
GAAU*AC	1
CAGC*GG	1

Non-Watson-Crick part of the motif

Sequence	Counts
AA*	10
UA*	5
AAA*	1
CA*	1
AG*	1

Release history

Release	0.6
Date	2012-04-02
Status	> 2 parents

Parent motifs

Parent motif	Common motif instances	Only in IL_92027.1	Only in the parent motif
IL_79143.1 Compare	IL_1U9S_005, IL_1U9S_004, IL_1FJG_025, IL_1U9S_002, IL_2QBG_074, IL_1S72_068, IL_2ZJR_069	IL_1S03_003, IL_1S72_101, IL_1S03_007, IL_3Q1Q_005, IL_1I6U_002, IL_1I6U_004, IL_4A1C_006, IL_3U5F_040, IL_2AW7_032, IL_4A1B_019, IL_3U5H_091	IL_3PYO_063, IL_3O30_040
IL_21341.1 Compare	IL_2AW7_032, IL_1I6U_002, IL_1I6U_004	IL_1S03_003, IL_1S72_101, IL_1S03_007, IL_1U9S_004, IL_1U9S_005, IL_1U9S_002, IL_2QBG_074, IL_1S72_068, IL_3Q1Q_005, IL_3U5H_091, IL_2ZJR_069, IL_4A1C_006, IL_3U5F_040, IL_4A1B_019, IL_1FJG_025
IL_44024.1 Compare	IL_1S03_003, IL_1S03_007	IL_1S72_101, IL_3Q1Q_005, IL_1U9S_005, IL_1U9S_004, IL_1FJG_025, IL_1U9S_002, IL_2QBG_074, IL_1S72_068, IL_1I6U_002, IL_1I6U_004, IL_2ZJR_069, IL_4A1C_006, IL_3U5F_040, IL_2AW7_032, IL_4A1B_019, IL_3U5H_091
IL_10310.1 Compare	IL_3Q1Q_005	IL_1S03_003, IL_3U5H_091, IL_1S72_101, IL_1S03_007, IL_1U9S_004, IL_1U9S_005, IL_1U9S_002, IL_2QBG_074, IL_1S72_068, IL_1I6U_002, IL_1I6U_004, IL_2ZJR_069, IL_4A1C_006, IL_3U5F_040, IL_2AW7_032, IL_4A1B_019, IL_1FJG_025
IL_33509.1 Compare	IL_1S72_101	IL_1S03_003, IL_1FJG_025, IL_1S03_007, IL_3Q1Q_005, IL_1U9S_004, IL_1U9S_005, IL_1U9S_002, IL_2QBG_074, IL_1S72_068, IL_1I6U_002, IL_1I6U_004, IL_2ZJR_069, IL_4A1C_006, IL_3U5F_040, IL_2AW7_032, IL_4A1B_019, IL_3U5H_091

Children motifs

Child motif	Common motif instances	Only in IL_92027.1	Only in the child motif
IL_92027.2 Compare	IL_1S72_101, IL_1S03_007, IL_1U9S_005, IL_1U9S_004, IL_1FJG_025, IL_1U9S_002, IL_2QBG_074, IL_1S72_068, IL_4A1C_006, IL_3Q1Q_005, IL_1I6U_004, IL_2ZJR_069, IL_3U5F_040, IL_2AW7_032, IL_4A1B_019, IL_3U5H_091	IL_1S03_003, IL_1I6U_002	IL_3TZR_001

Annotations: (8)
Major groove minor groove platform; mini C-loop (H) (4)
Major groove minor groove platform; mini C-loop (4)
Major groove intercalation (1)
Minor groove platform, major groove intercalation (1)
Basepair signature: 06_cWW-cSH-cWS-cWW
Heat map statistics: Min 0.03 | Avg 0.44 | Max 0.87

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Coloring options: Nucleotide numbers

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