Motif IL_22529.1 Version IL_22529.1 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1VX6_029 | 1VX6 | 0.4014 | 0 | A | 28S ribosomal RNA | G | 914 | G | 915 | U | 916 | * | A | 743 | G | 744 | C | 745 | cWW | cWW | |
| 2 | IL_3U5F_012 | 3U5F | 0.2821 | 0 | 6 | 18S rRNA | A | 162 | G | 163 | A | 164 | * | U | 150 | G | 151 | U | 152 | cWW | cWW | |
| 3 | IL_4CUX_067 | 4CUX | 0.2919 | 0 | 2 | 18S RRNA | U | 1290 | G | 1291 | G | 1292 | * | C | 1323 | G | 1324 | A | 1325 | cWW | cWW | |
| 4 | IL_1SI3_001 | 1SI3 | 0.0000 | 0 | Isolated non-canonical cWW contact | B | RNA (9-mer) | U | 403 | G | 404 | A | 405 | * | U | 403||||4_675 | G | 404||||4_675 | A | 405||||4_675 | cWW | cWW |
| 5 | IL_4CUX_036 | 4CUX | 0.2636 | 0 | 2 | 18S RRNA | C | 646 | G | 647 | G | 648 | * | C | 686 | G | 687 | G | 688 | ncWW | ncWW | |
| 6 | IL_3U5F_093 | 3U5F | 0.7446 | 0 | 6 | 18S rRNA | C | 1711 | A | 1712 | G | 1713 | * | U | 1688 | A | 1689 | G | 1690 | ncWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGU*AGC | 1 |
| AGA*UGU | 1 |
| UGG*CGA | 1 |
| UGA*UGA | 1 |
| CGG*CGG | 1 |
| CAG*UAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*G | 5 |
| A*A | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-07 |
| Status | > 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_22529.1 | Only in the parent motif |
|---|---|---|---|
| IL_37688.1 Compare | IL_3U5F_012, IL_4CUX_067, IL_4CUX_036 | IL_3U5F_093, IL_1VX6_029, IL_1SI3_001 | IL_2ZI0_001, IL_1VWW_097 |
| IL_53587.1 Compare | IL_3U5F_093 | IL_3U5F_012, IL_1SI3_001, IL_1VX6_029, IL_4CUX_067, IL_4CUX_036 | IL_1S72_046, IL_4CUV_084, IL_4KYY_002, IL_2QBG_045, IL_3U5H_062, IL_4TS2_003, IL_3U5H_052, IL_1VW3_049, IL_4QCN_041, IL_4CUV_064, IL_2QBG_065, IL_4QCN_063, IL_3U5H_085, IL_1VW3_035, IL_4IOA_043, IL_4QCN_030, IL_3LOA_003, IL_1VX6_063, IL_1VW3_070, IL_1S72_062, IL_4A1B_081 |
| IL_79398.1 Compare | IL_1VX6_029 | IL_3U5F_012, IL_3U5F_093, IL_1SI3_001, IL_4CUX_067, IL_4CUX_036 | IL_4ERD_003, IL_4J39_001 |
| IL_06177.1 Compare | IL_1SI3_001 | IL_3U5F_012, IL_3U5F_093, IL_1VX6_029, IL_4CUX_067, IL_4CUX_036 |
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Isolated non-canonical cWW contact (1)
- Basepair signature
- cWW-L-R-cWW
- Heat map statistics
- Min 0.26 | Avg 0.42 | Max 0.89
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