Motif IL_37688.1 Version IL_37688.1 of this group appears in releases 1.17 to 1.17

Download

Csv

Json

Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3	break		4		5		6	1-6	3-4
1	IL_2ZI0_001	2ZI0	0.5616	0	Isolated near basepair	C+D	RNA (21-mer)	U	9	U	10	A	11	*	U	9	U	10	A	11	cWW	cWW
2	IL_4CUX_067	4CUX	0.0000	0		2	18S RRNA	U	1290	G	1291	G	1292	*	C	1323	G	1324	A	1325	cWW	cWW
3	IL_3U5F_012	3U5F	0.2865	0		6	18S rRNA	U	150	G	151	U	152	*	A	162	G	163	A	164	cWW	cWW
4	IL_4CUX_036	4CUX	0.4138	0		2	18S RRNA	C	686	G	687	G	688	*	C	646	G	647	G	648	ncWW	ncWW
5	IL_1VWW_097	1VWW	0.5833	5		5	28S ribosomal RNA	C	2772	G	2773	C	2774	*	G	2542	A	2543	G	2547	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UUA*UUA	1
UGG*CGA	1
UGU*AGA	1
CGG*CGG	1
UGUAUG*CGAAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
G*G	3
U*U	1
GUAU*GAA	1

Release history

Release	1.17
Date	2014-09-04
Status	New id, 2 parents

Parent motifs

Parent motif	Common motif instances	Only in IL_37688.1	Only in the parent motif
IL_32987.1 Compare	IL_3U5F_012, IL_4CUX_067, IL_4CUX_036	IL_2ZI0_001, IL_1VWW_097	IL_4CUV_084, IL_3U5F_006, IL_3U5H_085, IL_4A1B_081
IL_72641.2 Compare	IL_2ZI0_001	IL_3U5F_012, IL_4CUX_036, IL_4CUX_067, IL_1VWW_097	IL_4ERD_003, IL_4CUX_020

Children motifs

Child motif	Common motif instances	Only in IL_37688.1	Only in the child motif
IL_22529.1 Compare	IL_3U5F_012, IL_4CUX_067, IL_4CUX_036	IL_2ZI0_001, IL_1VWW_097	IL_3U5F_093, IL_1VX6_029, IL_1SI3_001
IL_04238.1 Compare	IL_2ZI0_001	IL_3U5F_012, IL_1VWW_097, IL_4CUX_067, IL_4CUX_036	IL_1GID_006, IL_1GID_013, IL_4QCN_025, IL_2XXA_011

Annotations: (4)
Isolated near basepair (1)
Basepair signature: cWW-L-R-cWW
Heat map statistics: Min 0.29 | Avg 0.44 | Max 0.72

Help

loadScript https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//core/package.js

loadScript https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//core/corejmol.z.js

JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__644389950574408__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__644389950574408__)

vwrOptions:

{ "name":"jmolApplet0","applet":true,"documentBase":"https://rna.bgsu.edu/rna3dhub/motif/view/IL_37688.1","platform":"J.awtjs2d.Platform","fullName":"jmolApplet0__644389950574408__","codePath":"https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//","display":"jmolApplet0_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"644389950574408","bgcolor":"white" }

setting document base to "https://rna.bgsu.edu/rna3dhub/motif/view/IL_37688.1"

Jmol Version: 14.4.4_2016.04.25 2016-04-26 17:41

java.vendor: Java2Script (HTML5)

java.version: 2016-04-21 14:47:41 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

loadScript https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//core/corescript.z.js

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor white

backgroundColor = "white"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jmolApplet0__644389950574408__ ready

script 1 started

loadScript https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//core/coretext.z.js

Script completed

Jmol script terminated

script 2 started

Script completed

Jmol script terminated

script 3 started

Script completed

Jmol script terminated

script 4 started

Script completed

Jmol script terminated

Coloring options: Nucleotide numbers

Motif IL_37688.1 Version IL_37688.1 of this group appears in releases 1.17 to 1.17 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_37688.1 Version IL_37688.1 of this group appears in releases 1.17 to 1.17

Download

Csv

Json