Motif IL_24293.1 Version IL_24293.1 of this group appears in releases 1.12 to 1.13
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-5 | 3-4 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3E5C_001 | 3E5C | 0.0000 | 1 | Isolated non-canonical cWW pair | A | SMK box (SAM-III) Riboswitch | G | 12 | A | 13 | U | 14 | * | A | 27 | G | 28 | A | 29 | G | 31 | C | 32 | cWW | cWW | cWW |
| 2 | IL_3V2F_085 | 3V2F | 0.9851 | 0 | A | 23S Ribosomal RNA | C | 2297 | A | 2298 | G | 2299 | * | C | 2317 | G | 2318 | G | 2319 | A | 2320 | G | 2321 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAU*AGAUGC | 1 |
| CAG*CGGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*GAUG | 1 |
| A*GGA | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in IL_24293.1 | Only in the parent motif |
|---|---|---|---|
| IL_85015.1 Compare | IL_3V2F_085 | IL_3E5C_001 | IL_1S72_078 |
| IL_95980.1 Compare | IL_3E5C_001 | IL_3V2F_085 |
Children motifs
| Child motif | Common motif instances | Only in IL_24293.1 | Only in the child motif |
|---|---|---|---|
| IL_86453.1 Compare | IL_3E5C_001 | IL_3V2F_085 |
- Annotations
-
- Isolated non-canonical cWW pair (1)
- (1)
- Basepair signature
- cWW-L-R-R-R-cWW
- Heat map statistics
- Min 0.99 | Avg 0.49 | Max 0.99
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