#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3break 4 5 6 7 81-82-53-4
1 IL_1S72_0781S720.000000 LSU rRNAC2331A2332G2333*C2351G2352A2353A2354G2355cWWtHScWW
2 IL_3V2F_0853V2F0.51300A23S Ribosomal RNAC2297A2298G2299*C2317G2318G2319A2320G2321cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CAG*CGAAG1
CAG*CGGAG1
Non-Watson-Crick part of the motif
SequenceCounts
A*GAA1
A*GGA1

Release history

Release1.61.71.81.91.101.11
Date2013-08-312013-09-282013-11-052013-12-072014-01-042014-02-01
StatusNew id, 2 parentsExact matchExact matchExact matchExact matchExact match

Parent motifs

Children motifs

Child motifCommon motif instancesOnly in IL_85015.1Only in the child motif
IL_24293.1
Compare
IL_3V2F_085IL_1S72_078IL_3E5C_001
IL_37104.3
Compare
IL_1S72_078IL_3V2F_085IL_2QBG_082, IL_3V2F_079, IL_4IOA_082, IL_4BPP_026, IL_3U5H_104, IL_4IOA_077, IL_3U5H_100, IL_1S72_076, IL_3V2F_012, IL_4A1B_102
Annotations
  • (2)
  • Basepair signature
    cWW-R-R-tHS-cWW
    Heat map statistics
    Min 0.51 | Avg 0.26 | Max 0.51
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