Motif IL_85015.1 Version IL_85015.1 of this group appears in releases 1.6 to 1.11
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-5 | 3-4 | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_1S72_078 | 1S72 | 0.0000 | 0 | 0 | LSU rRNA | C | 2331 | A | 2332 | G | 2333 | * | C | 2351 | G | 2352 | A | 2353 | A | 2354 | G | 2355 | cWW | tHS | cWW |
2 | IL_3V2F_085 | 3V2F | 0.5130 | 0 | A | 23S Ribosomal RNA | C | 2297 | A | 2298 | G | 2299 | * | C | 2317 | G | 2318 | G | 2319 | A | 2320 | G | 2321 | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CAG*CGAAG | 1 |
CAG*CGGAG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
A*GAA | 1 |
A*GGA | 1 |
Release history
Release | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 |
---|---|---|---|---|---|---|
Date | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 |
Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
Parent motif | Common motif instances | Only in IL_85015.1 | Only in the parent motif |
---|---|---|---|
IL_35595.1 Compare | IL_3V2F_085 | IL_1S72_078 | IL_3E5C_001 |
IL_37104.1 Compare | IL_1S72_078 | IL_3V2F_085 | IL_2QBG_082, IL_3V2F_079, IL_4IOA_082, IL_4BPP_026, IL_3U5H_104, IL_4IOA_077, IL_3U5H_100, IL_1S72_076, IL_3V2F_012, IL_4A1B_102 |
Children motifs
Child motif | Common motif instances | Only in IL_85015.1 | Only in the child motif |
---|---|---|---|
IL_24293.1 Compare | IL_3V2F_085 | IL_1S72_078 | IL_3E5C_001 |
IL_37104.3 Compare | IL_1S72_078 | IL_3V2F_085 | IL_2QBG_082, IL_3V2F_079, IL_4IOA_082, IL_4BPP_026, IL_3U5H_104, IL_4IOA_077, IL_3U5H_100, IL_1S72_076, IL_3V2F_012, IL_4A1B_102 |
- Annotations
-
- (2)
- Basepair signature
- cWW-R-R-tHS-cWW
- Heat map statistics
- Min 0.51 | Avg 0.26 | Max 0.51
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