#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6 7 8break 9 101-105-65-78-9
1 IL_3U5F_0303U5F0.31610618S rRNAA550G551G552G553C554A555A556G557*C587U588cWWcSHcWW
2 IL_4BPP_0294BPP0.29500A18S RRNAA543G544G545G546C547A548A549G550*C581U582cWWcSHcWW
3 IL_1FJG_0201FJG0.30490SSU/LSU pseudoknot (H)A SSU rRNAC504G505G506C507C508A509A510C511*G540G541cWWncSHntSWcWW
4 IL_2AW7_0272AW70.29140A16S ribosomal RNAC504G505G506C507U508A509A510C511*G540G541cWWcWW
5 IL_4A1B_0554A1B0.16420126S RRNAC1200G1201C1202C1203C1204A1205A1206A1207*U1352G1353cWWcSHcWW
6 IL_1S72_0391S720.14780SSU/LSU pseudoknot (H)0 LSU rRNAU1101C1102C1103C1104C1105A1106A1107G1108*C1254A1255cWWcSHcWW
7 IL_4NVV_0394NVV0.00000A23S Ribosomal RNAC1050C1051C1052C1053C1054A1055A1056G1057*C1196G1197cWWcSHcWW
8 IL_4IOA_0334IOA0.10110SSU/LSU pseudoknotX LSU rRNAU1015C1016C1017C1018U1019A1020A1021A1022*U1161A1162cWWcSHcWW
9 IL_2QBG_0372QBG0.10940B23S rRNAU1004C1005C1006C1007A1008A1009A1010G1011*C1150A1151cWWncSHcWW
10 IL_3U5H_0543U5H0.35780525S rRNAU1173G1174C1175C1176G1177G1178A1179A1180*U1325A1326cWWchHcWW

3D structures

Complete motif including flanking bases
SequenceCounts
AGGGCAAG*CU2
CGGCCAAC*GG1
CGGCUAAC*GG1
CGCCCAAA*UG1
UCCCCAAG*CA1
CCCCCAAG*CG1
UCCCUAAA*UA1
UCCCAAAG*CA1
UGCCGGAA*UA1
Non-Watson-Crick part of the motif
SequenceCounts
GGGCAA*2
CCCCAA*2
GGCCAA*1
GGCUAA*1
GCCCAA*1
CCCUAA*1
CCCAAA*1
GCCGGA*1
Annotations
  • (7)
  • SSU/LSU pseudoknot (H) (2)
  • SSU/LSU pseudoknot (1)
  • Basepair signature
    cWW-L-L-L-cSH-L-cWW
    Heat map statistics
    Min 0.09 | Avg 0.25 | Max 0.43
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