Motif IL_24546.6 Version IL_24546.6 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 1-10 | 5-6 | 5-7 | 8-9 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3U5F_030 | 3U5F | 0.3161 | 0 | 6 | 18S rRNA | A | 550 | G | 551 | G | 552 | G | 553 | C | 554 | A | 555 | A | 556 | G | 557 | * | C | 587 | U | 588 | cWW | cSH | cWW | ||
| 2 | IL_4BPP_029 | 4BPP | 0.2950 | 0 | A | 18S RRNA | A | 543 | G | 544 | G | 545 | G | 546 | C | 547 | A | 548 | A | 549 | G | 550 | * | C | 581 | U | 582 | cWW | cSH | cWW | ||
| 3 | IL_1FJG_020 | 1FJG | 0.3049 | 0 | SSU/LSU pseudoknot (H) | A | SSU rRNA | C | 504 | G | 505 | G | 506 | C | 507 | C | 508 | A | 509 | A | 510 | C | 511 | * | G | 540 | G | 541 | cWW | ncSH | ntSW | cWW |
| 4 | IL_4A1B_055 | 4A1B | 0.1642 | 0 | 1 | 26S RRNA | C | 1200 | G | 1201 | C | 1202 | C | 1203 | C | 1204 | A | 1205 | A | 1206 | A | 1207 | * | U | 1352 | G | 1353 | cWW | cSH | cWW | ||
| 5 | IL_1S72_039 | 1S72 | 0.1478 | 0 | SSU/LSU pseudoknot (H) | 0 | LSU rRNA | U | 1101 | C | 1102 | C | 1103 | C | 1104 | C | 1105 | A | 1106 | A | 1107 | G | 1108 | * | C | 1254 | A | 1255 | cWW | cSH | cWW | |
| 6 | IL_4NVV_039 | 4NVV | 0.0000 | 0 | A | 23S Ribosomal RNA | C | 1050 | C | 1051 | C | 1052 | C | 1053 | C | 1054 | A | 1055 | A | 1056 | G | 1057 | * | C | 1196 | G | 1197 | cWW | cSH | cWW | ||
| 7 | IL_2QBG_037 | 2QBG | 0.1094 | 0 | B | 23S rRNA | U | 1004 | C | 1005 | C | 1006 | C | 1007 | A | 1008 | A | 1009 | A | 1010 | G | 1011 | * | C | 1150 | A | 1151 | cWW | ncSH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AGGGCAAG*CU | 2 |
| CGGCCAAC*GG | 1 |
| CGCCCAAA*UG | 1 |
| UCCCCAAG*CA | 1 |
| CCCCCAAG*CG | 1 |
| UCCCAAAG*CA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGGCAA* | 2 |
| CCCCAA* | 2 |
| GGCCAA* | 1 |
| GCCCAA* | 1 |
| CCCAAA* | 1 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-20 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_24546.6 | Only in the parent motif |
|---|---|---|---|
| IL_24546.5 Compare | IL_2QBG_037, IL_4BPP_029, IL_3U5F_030, IL_1S72_039, IL_1FJG_020, IL_4NVV_039, IL_4A1B_055 | IL_2AW7_027, IL_4IOA_033, IL_3U5H_054 |
Children motifs
| Child motif | Common motif instances | Only in IL_24546.6 | Only in the child motif |
|---|---|---|---|
| IL_89033.1 Compare | IL_2QBG_037, IL_4BPP_029, IL_3U5F_030, IL_1S72_039, IL_1FJG_020, IL_4A1B_055 | IL_4NVV_039 | IL_3U5H_054, IL_3J7A_024, IL_4CUV_055, IL_4QCN_036, IL_4IOA_033, IL_2AW7_027 |
- Annotations
-
- (5)
- SSU/LSU pseudoknot (H) (2)
- Basepair signature
- cWW-L-L-L-cSH-L-cWW
- Heat map statistics
- Min 0.09 | Avg 0.21 | Max 0.35
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