Motif IL_25082.1 Version IL_25082.1 of this group appears in releases 0.6 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | break | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 1-17 | 5-14 | 6-13 | 7-12 | 7-15 | 8-11 | 9-10 | |||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3U5F_064 | 3U5F | 0 | 1 | 6 | 18S rRNA | A | 1224 | U | 1225 | A | 1226 | A | 1227 | G | 1229 | A | 1230 | U | 1231 | U | 1232 | G | 1233 | * | C | 1252 | U | 1253 | U | 1254 | G | 1255 | A | 1256 | U | 1257 | U | 1258 | U | 1259 | ncWW | ntSH | ntSs | cWw | ncSW | cWw | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUAAGGAUUG*CUUGAUUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAAGGAUU*UUGAUU | 1 |
Release history
| Release | 0.6 | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 | 1.15 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2012-04-02 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 | 2014-06-20 |
| Status | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in IL_25082.1 | Only in the child motif |
|---|---|---|---|
| IL_51576.1 Compare | IL_3U5F_064 | IL_1VWW_105 |
- Annotations
- Basepair signature
- cWW-L-R-R-L-L-tSH-tSS-cWW-cWW-cWW
- Heat map statistics
- Min 0.00 | Avg 0.00 | Max 0.00
Coloring options: