Motif IL_26097.1 Version IL_26097.1 of this group appears in releases 0.1 to 0.1
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 3-9 | 5-8 | 6-7 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1S72_019 | 1S72 | 0.4613 | 0 | 0 | LSU rRNA | A | 562 | C | 563 | G | 564 | A | 565 | A | 566 | U | 567 | * | A | 591 | G | 592 | A | 593 | C | 594 | U | 595 | cWW | cWB | tHS | cWW | ||
| 2 | IL_2ZJR_099 | 2ZJR | 0.0000 | 1 | UAA/GAN with extra cWW (H) | X | LSU rRNA | G | 2717 | A | 2718 | U | 2719 | A | 2720 | A | 2721 | C | 2722 | * | G | 2742 | G | 2743 | A | 2744 | G | 2746 | C | 2747 | cWW | cWW | tWH | tHS | cWW |
| 3 | IL_3F1H_104 | 3F1H | 0.1146 | 1 | A | 23S RRNA | G | 2737 | A | 2738 | U | 2739 | A | 2740 | A | 2741 | C | 2742 | * | G | 2762 | G | 2763 | A | 2764 | G | 2766 | C | 2767 | cWW | cWW | tWH | tHS | cWW | |
| 4 | IL_1S72_094 | 1S72 | 0.1895 | 1 | UAA/GAN with extra cWW (H) | 0 | LSU rRNA | G | 2772 | G | 2773 | U | 2774 | A | 2775 | A | 2776 | G | 2777 | * | C | 2797 | G | 2798 | A | 2799 | A | 2801 | C | 2802 | cWW | cWW | tWH | tHS | cWW |
| 5 | IL_3F1H_060 | 3F1H | 0.6224 | 1 | A | 23S RRNA | U | 1541 | G | 1542 | A | 1543 | A | 1545 | A | 1546 | C | 154|||B | * | G | 1526 | G | 1527 | A | 1528 | A | 1529 | G | 1530 | ncWW | ntSH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUAAC*GGAAGC | 2 |
| ACGAAU*AGACU | 1 |
| GGUAAG*CGAAAC | 1 |
| UGACAAC*GGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUAA*GAAG | 2 |
| CGAA*GAC | 1 |
| GUAA*GAAA | 1 |
| GACAA*GAA | 1 |
Release history
| Release | 0.1 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in IL_26097.1 | Only in the child motif |
|---|---|---|---|
| IL_26097.2 Compare | IL_1S72_019, IL_2ZJR_099, IL_1S72_094, IL_3F1H_060, IL_3F1H_104 | IL_1OOA_002, IL_1OOA_003 |
- Annotations
-
- (3)
- UAA/GAN with extra cWW (H) (2)
- Basepair signature
- Heat map statistics
- Min 0.11 | Avg 0.36 | Max 0.65
Coloring options: