#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6break 7 8 9 10 111-112-103-95-86-7
1 IL_1S72_0941S721.38401UAA/GAN with extra cWW (H)0 LSU rRNAG2772G2773U2774A2775A2776G2777*C2797G2798A2799A2801C2802cWWcWWtWHtHScWW
2 IL_2ZJR_0992ZJR1.40931UAA/GAN with extra cWW (H)X LSU rRNAG2717A2718U2719A2720A2721C2722*G2742G2743A2744G2746C2747cWWcWWtWHtHScWW
3 IL_3F1H_0603F1H1.41991A23S RRNAU1541G1542A1543A1545A1546C154|||B*G1526G1527A1528A1529G1530ncWWntSHcWW
4 IL_3F1H_1043F1H1.44411A23S RRNAG2737A2738U2739A2740A2741C2742*G2762G2763A2764G2766C2767cWWcWWtWHtHScWW
5 IL_1S72_0191S721.321400 LSU rRNAA562C563G564A565A566U567*A591G592A593C594U595cWWcWBtHScWW
6 IL_1OOA_0031OOA0.12480DRNA aptamerC5U6U7G8A9A10*U21G22G23C24G25cWWntSHntHScWW
7 IL_1OOA_0021OOA0.00000CRNA aptamerC5U6U7G8A9A10*U21G22G23C24G25cWWntSHtHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
GAUAAC*GGAAGC2
CUUGAA*UGGCG2
GGUAAG*CGAAAC1
GGAAG*UGACAAC1
ACGAAU*AGACU1
Non-Watson-Crick part of the motif
SequenceCounts
AUAA*GAAG2
UUGA*GGC2
GUAA*GAAA1
GAA*GACAA1
CGAA*GAC1

Release history

Release0.20.3
Date2011-12-082011-12-08
StatusUpdated, 2 parentsExact match

Parent motifs

Children motifs

Child motifCommon motif instancesOnly in IL_26097.2Only in the child motif
IL_26097.3
Compare
IL_1S72_019, IL_2ZJR_099, IL_1S72_094, IL_3F1H_060, IL_3F1H_104IL_1OOA_002, IL_1OOA_003
IL_19202.1
Compare
IL_1OOA_002, IL_1OOA_003IL_1S72_019, IL_3F1H_060, IL_1S72_094, IL_2ZJR_099, IL_3F1H_104
Annotations
  • (5)
  • UAA/GAN with extra cWW (H) (2)
  • Basepair signature
    Heat map statistics
    Min 0.11 | Avg 0.76 | Max 1.45
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