Motif IL_26097.2 Version IL_26097.2 of this group appears in releases 0.2 to 0.3
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 3-9 | 5-8 | 6-7 | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_1S72_094 | 1S72 | 1.3840 | 1 | UAA/GAN with extra cWW (H) | 0 | LSU rRNA | G | 2772 | G | 2773 | U | 2774 | A | 2775 | A | 2776 | G | 2777 | * | C | 2797 | G | 2798 | A | 2799 | A | 2801 | C | 2802 | cWW | cWW | tWH | tHS | cWW |
2 | IL_2ZJR_099 | 2ZJR | 1.4093 | 1 | UAA/GAN with extra cWW (H) | X | LSU rRNA | G | 2717 | A | 2718 | U | 2719 | A | 2720 | A | 2721 | C | 2722 | * | G | 2742 | G | 2743 | A | 2744 | G | 2746 | C | 2747 | cWW | cWW | tWH | tHS | cWW |
3 | IL_3F1H_060 | 3F1H | 1.4199 | 1 | A | 23S RRNA | U | 1541 | G | 1542 | A | 1543 | A | 1545 | A | 1546 | C | 154|||B | * | G | 1526 | G | 1527 | A | 1528 | A | 1529 | G | 1530 | ncWW | ntSH | cWW | |||
4 | IL_3F1H_104 | 3F1H | 1.4441 | 1 | A | 23S RRNA | G | 2737 | A | 2738 | U | 2739 | A | 2740 | A | 2741 | C | 2742 | * | G | 2762 | G | 2763 | A | 2764 | G | 2766 | C | 2767 | cWW | cWW | tWH | tHS | cWW | |
5 | IL_1S72_019 | 1S72 | 1.3214 | 0 | 0 | LSU rRNA | A | 562 | C | 563 | G | 564 | A | 565 | A | 566 | U | 567 | * | A | 591 | G | 592 | A | 593 | C | 594 | U | 595 | cWW | cWB | tHS | cWW | ||
6 | IL_1OOA_003 | 1OOA | 0.1248 | 0 | D | RNA aptamer | C | 5 | U | 6 | U | 7 | G | 8 | A | 9 | A | 10 | * | U | 21 | G | 22 | G | 23 | C | 24 | G | 25 | cWW | ntSH | ntHS | cWW | ||
7 | IL_1OOA_002 | 1OOA | 0.0000 | 0 | C | RNA aptamer | C | 5 | U | 6 | U | 7 | G | 8 | A | 9 | A | 10 | * | U | 21 | G | 22 | G | 23 | C | 24 | G | 25 | cWW | ntSH | tHS | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GAUAAC*GGAAGC | 2 |
CUUGAA*UGGCG | 2 |
GGUAAG*CGAAAC | 1 |
GGAAG*UGACAAC | 1 |
ACGAAU*AGACU | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
AUAA*GAAG | 2 |
UUGA*GGC | 2 |
GUAA*GAAA | 1 |
GAA*GACAA | 1 |
CGAA*GAC | 1 |
Release history
Parent motifs
Parent motif | Common motif instances | Only in IL_26097.2 | Only in the parent motif |
---|---|---|---|
IL_26097.1 Compare | IL_1S72_019, IL_2ZJR_099, IL_1S72_094, IL_3F1H_060, IL_3F1H_104 | IL_1OOA_002, IL_1OOA_003 | |
IL_10861.1 Compare | IL_1OOA_002, IL_1OOA_003 | IL_1S72_019, IL_3F1H_060, IL_1S72_094, IL_2ZJR_099, IL_3F1H_104 |
Children motifs
Child motif | Common motif instances | Only in IL_26097.2 | Only in the child motif |
---|---|---|---|
IL_26097.3 Compare | IL_1S72_019, IL_2ZJR_099, IL_1S72_094, IL_3F1H_060, IL_3F1H_104 | IL_1OOA_002, IL_1OOA_003 | |
IL_19202.1 Compare | IL_1OOA_002, IL_1OOA_003 | IL_1S72_019, IL_3F1H_060, IL_1S72_094, IL_2ZJR_099, IL_3F1H_104 |
- Annotations
-
- (5)
- UAA/GAN with extra cWW (H) (2)
- Basepair signature
- Heat map statistics
- Min 0.11 | Avg 0.76 | Max 1.45
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