Motif IL_27267.1 Version IL_27267.1 of this group appears in releases 3.88 to 3.88

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3	break		4		5		6	1-6	2-5	3-4
1	IL_8C3A_407	8C3A	0.3837	1	Isolated cWH basepair	CM	SSU rRNA	G	285	A	286	U	287	*	A	263	U	265	C	266	cWW		cWW
2	IL_4P3U_001	4P3U	0.3495	0	Isolated non-canonical cWW pair	B+A	RNA (23-mer)	G	42	U	43	C	44	*	G	5	U	6	C	7	cWW		cWW
3	IL_8AMI_001	8AMI	0.2290	0	Other IL	A+B	RNA (9-mer)	U	4	G	5	G	6	*	U	4	G	5\|\|A	G	6	cWW		cWW
4	IL_4WF9_018	4WF9	0.2210	0	Isolated non-canonical cWW pair	X	LSU rRNA	U	638	U	639	G	640	*	U	705	U	706	G	707	cWW		cWW
5	IL_8C3A_468	8C3A	0.2084	0	Isolated non-canonical cWW pair	CM	SSU rRNA	C	1496	U	1497	G	1498	*	U	1483	U	1484	G	1485	cWW		cWW
6	IL_4KYY_002	4KYY	0.1881	0	Isolated non-canonical cWW pair	A+B	RNA 17-mer	U	8	U	9	G	10	*	U	8	U	9	G	10	cWW		cWW
7	IL_7A0S_107	7A0S	0.2161	0	Isolated non-canonical cWW pair	Y	5S rRNA	C	97	C	98	G	99	*	U	82	C	83	G	84	cWW	ncWB	cWW
8	IL_8C3A_477	8C3A	0.1567	0	Isolated non-canonical cWW pair	CM	SSU rRNA	U	1721	U	1722	G	1723	*	U	1652	U	1653	A	1654	cWW	ncwW	ncWW
9	IL_4V88_470	4V88	0.1644	0	Isolated non-canonical cWW pair	A6	SSU rRNA	U	1734	U	1735	G	1736	*	U	1665	U	1666	A	1667	cWW		cWW
10	IL_5TBW_016	5TBW	0.1310	0	Isolated non-canonical cWW pair	1	LSU rRNA	A	628	U	629	A	630	*	U	429	U	430	U	431	cWW		cWW
11	IL_4Y1M_005	4Y1M	0.0000	0	Isolated non-canonical cWW pair	B	E. coli yybP-ykoY riboswitch	U	4	U	5	U	6	*	A	103	U	104	A	105	cWW	ncwW	cWW
12	IL_8AF0_002	8AF0	0.1489	0	Isolated cWH basepair	C+D	RNA (19-mer)	G	34	U	35	C	36	*	G	34	U	35	C	36	cWW	cWH	cWW
13	IL_7VYX_001	7VYX	0.3344	0	Isolated non-canonical cWW pair	C	sgRNA	G	53	C	54	C	55	*	G	11	A	12	C	13	ncWW	ncWWa	cWW
14	IL_4V9K_064	4V9K	0.3308	0	Isolated non-canonical cWW pair	AW	tRNA	C	62	C	63	G	64	*	C	50	A	51	G	52	cWW	ncWWa	cWW
15	IL_4V88_405	4V88	0.2754	0	Isolated cWH basepair	A6	SSU rRNA	G	389	G	390	A	391	*	U	406	A	407	C	408	cWW	cHW	cWW
16	IL_8C3A_413	8C3A	0.3315	0	Isolated cWH basepair	CM	SSU rRNA	G	387	G	388	A	389	*	U	404	A	405	C	406	cWW	cHW	cWW
17	IL_7A0S_026	7A0S	0.3269	0	Isolated non-canonical cWW pair	X	LSU rRNA	A	936	C	937	G	938	*	C	864	A	865	U	866	cWW	cWW	cWW
18	IL_7A0S_042	7A0S	0.3189	0	Isolated non-canonical cWW pair	X	LSU rRNA	C	1218	C	1219	G	1220	*	C	1252	C	1253	G	1254	cWW	ncWB	cWW
19	IL_4V88_453	4V88	0.4128	0	Isolated cWH basepair	A6	SSU rRNA	C	1323	G	1324	A	1325	*	U	1290	G	1291	G	1292	cWW	cWH	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GUC*GUC	2
UUG*UUG	2
UUG*UUA	2
GGA*UAC	2
GAU*AAUC	1
UGG*UGG	1
CUG*UUG	1
CCG*UCG	1
AUA*UUU	1
UUU*AUA	1
GCC*GAC	1
CCG*CAG	1
ACG*CAU	1
CCG*CCG	1
CGA*UGG	1

Non-Watson-Crick part of the motif

Sequence	Counts
U*U	9
C*A	3
G*G	2
C*C	2
G*A	2
A*AU	1

Release history

Release	3.88
Date	2024-09-11
Status	New id, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Isolated non-canonical cWW pair (13)
Isolated cWH basepair (5)
Other IL (1)
Basepair signature: cWW-L-R-cWW
Heat map statistics: Min 0.11 | Avg 0.31 | Max 0.59

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