#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 5 61-62-53-4
1 IL_8C3A_4078C3A0.38371CM SSU rRNAG285A286U287*A263U265C266cWWcWW
2 IL_4P3U_0014P3U0.34950B+ARNA (23-mer)G42U43C44*G5U6C7cWWcWW
3 IL_8AMI_0018AMI0.22900A+BRNA (9-mer)U4G5G6*U4G5||AG6cWWcWW
4 IL_4WF9_0184WF90.22100X LSU rRNAU638U639G640*U705U706G707cWWcWW
5 IL_8C3A_4688C3A0.20840CM SSU rRNAC1496U1497G1498*U1483U1484G1485cWWcWW
6 IL_4KYY_0024KYY0.18810A+BRNA 17-merU8U9G10*U8U9G10cWWcWW
7 IL_7A0S_1077A0S0.21610Y 5S rRNAC97C98G99*U82C83G84cWWncWBcWW
8 IL_8C3A_4778C3A0.15670CM SSU rRNAU1721U1722G1723*U1652U1653A1654cWWncwWncWW
9 IL_4V88_4704V880.16440A6 SSU rRNAU1734U1735G1736*U1665U1666A1667cWWcWW
10 IL_5TBW_0165TBW0.131001 LSU rRNAA628U629A630*U429U430U431cWWcWW
11 IL_4Y1M_0054Y1M0.00000BE. coli yybP-ykoY riboswitchU4U5U6*A103U104A105cWWncwWcWW
12 IL_8AF0_0028AF00.14890C+DRNA (19-mer)G34U35C36*G34U35C36cWWcWHcWW
13 IL_7VYX_0017VYX0.33440CsgRNAG53C54C55*G11A12C13ncWWncWWacWW
14 IL_4V9K_0644V9K0.33080AW tRNAC62C63G64*C50A51G52cWWncWWacWW
15 IL_4V88_4054V880.27540Isolated cWH basepairA6 SSU rRNAG389G390A391*U406A407C408cWWcHWcWW
16 IL_8C3A_4138C3A0.33150Isolated cWH basepair (H)CM SSU rRNAG387G388A389*U404A405C406cWWcHWcWW
17 IL_7A0S_0267A0S0.32690X LSU rRNAA936C937G938*C864A865U866cWWcWWcWW
18 IL_7A0S_0427A0S0.31890X LSU rRNAC1218C1219G1220*C1252C1253G1254cWWncWBcWW
19 IL_4V88_4534V880.41280Isolated cWH basepairA6 SSU rRNAC1323G1324A1325*U1290G1291G1292cWWcWHcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GUC*GUC2
UUG*UUG2
UUG*UUA2
GGA*UAC2
GAU*AAUC1
UGG*UGG1
CUG*UUG1
CCG*UCG1
AUA*UUU1
UUU*AUA1
GCC*GAC1
CCG*CAG1
ACG*CAU1
CCG*CCG1
CGA*UGG1
Non-Watson-Crick part of the motif
SequenceCounts
U*U9
C*A3
G*G2
C*C2
G*A2
A*AU1

Release history

Release3.88
Date2024-09-11
StatusNew id, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (16)
  • Isolated cWH basepair (2)
  • Isolated cWH basepair (H) (1)
  • Basepair signature
    cWW-L-R-cWW
    Heat map statistics
    Min 0.11 | Avg 0.31 | Max 0.59
    Help

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