Motif IL_27267.1 Version IL_27267.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_8C3A_407 | 8C3A | 0.3837 | 1 | CM | SSU rRNA | G | 285 | A | 286 | U | 287 | * | A | 263 | U | 265 | C | 266 | cWW | cWW | ||
2 | IL_4P3U_001 | 4P3U | 0.3495 | 0 | B+A | RNA (23-mer) | G | 42 | U | 43 | C | 44 | * | G | 5 | U | 6 | C | 7 | cWW | cWW | ||
3 | IL_8AMI_001 | 8AMI | 0.2290 | 0 | A+B | RNA (9-mer) | U | 4 | G | 5 | G | 6 | * | U | 4 | G | 5||A | G | 6 | cWW | cWW | ||
4 | IL_4WF9_018 | 4WF9 | 0.2210 | 0 | X | LSU rRNA | U | 638 | U | 639 | G | 640 | * | U | 705 | U | 706 | G | 707 | cWW | cWW | ||
5 | IL_8C3A_468 | 8C3A | 0.2084 | 0 | CM | SSU rRNA | C | 1496 | U | 1497 | G | 1498 | * | U | 1483 | U | 1484 | G | 1485 | cWW | cWW | ||
6 | IL_4KYY_002 | 4KYY | 0.1881 | 0 | A+B | RNA 17-mer | U | 8 | U | 9 | G | 10 | * | U | 8 | U | 9 | G | 10 | cWW | cWW | ||
7 | IL_7A0S_107 | 7A0S | 0.2161 | 0 | Y | 5S rRNA | C | 97 | C | 98 | G | 99 | * | U | 82 | C | 83 | G | 84 | cWW | ncWB | cWW | |
8 | IL_8C3A_477 | 8C3A | 0.1567 | 0 | CM | SSU rRNA | U | 1721 | U | 1722 | G | 1723 | * | U | 1652 | U | 1653 | A | 1654 | cWW | ncwW | ncWW | |
9 | IL_4V88_470 | 4V88 | 0.1644 | 0 | A6 | SSU rRNA | U | 1734 | U | 1735 | G | 1736 | * | U | 1665 | U | 1666 | A | 1667 | cWW | cWW | ||
10 | IL_5TBW_016 | 5TBW | 0.1310 | 0 | 1 | LSU rRNA | A | 628 | U | 629 | A | 630 | * | U | 429 | U | 430 | U | 431 | cWW | cWW | ||
11 | IL_4Y1M_005 | 4Y1M | 0.0000 | 0 | B | E. coli yybP-ykoY riboswitch | U | 4 | U | 5 | U | 6 | * | A | 103 | U | 104 | A | 105 | cWW | ncwW | cWW | |
12 | IL_8AF0_002 | 8AF0 | 0.1489 | 0 | C+D | RNA (19-mer) | G | 34 | U | 35 | C | 36 | * | G | 34 | U | 35 | C | 36 | cWW | cWH | cWW | |
13 | IL_7VYX_001 | 7VYX | 0.3344 | 0 | C | sgRNA | G | 53 | C | 54 | C | 55 | * | G | 11 | A | 12 | C | 13 | ncWW | ncWWa | cWW | |
14 | IL_4V9K_064 | 4V9K | 0.3308 | 0 | AW | tRNA | C | 62 | C | 63 | G | 64 | * | C | 50 | A | 51 | G | 52 | cWW | ncWWa | cWW | |
15 | IL_4V88_405 | 4V88 | 0.2754 | 0 | Isolated cWH basepair | A6 | SSU rRNA | G | 389 | G | 390 | A | 391 | * | U | 406 | A | 407 | C | 408 | cWW | cHW | cWW |
16 | IL_8C3A_413 | 8C3A | 0.3315 | 0 | Isolated cWH basepair (H) | CM | SSU rRNA | G | 387 | G | 388 | A | 389 | * | U | 404 | A | 405 | C | 406 | cWW | cHW | cWW |
17 | IL_7A0S_026 | 7A0S | 0.3269 | 0 | X | LSU rRNA | A | 936 | C | 937 | G | 938 | * | C | 864 | A | 865 | U | 866 | cWW | cWW | cWW | |
18 | IL_7A0S_042 | 7A0S | 0.3189 | 0 | X | LSU rRNA | C | 1218 | C | 1219 | G | 1220 | * | C | 1252 | C | 1253 | G | 1254 | cWW | ncWB | cWW | |
19 | IL_4V88_453 | 4V88 | 0.4128 | 0 | Isolated cWH basepair | A6 | SSU rRNA | C | 1323 | G | 1324 | A | 1325 | * | U | 1290 | G | 1291 | G | 1292 | cWW | cWH | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GUC*GUC | 2 |
UUG*UUG | 2 |
UUG*UUA | 2 |
GGA*UAC | 2 |
GAU*AAUC | 1 |
UGG*UGG | 1 |
CUG*UUG | 1 |
CCG*UCG | 1 |
AUA*UUU | 1 |
UUU*AUA | 1 |
GCC*GAC | 1 |
CCG*CAG | 1 |
ACG*CAU | 1 |
CCG*CCG | 1 |
CGA*UGG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
U*U | 9 |
C*A | 3 |
G*G | 2 |
C*C | 2 |
G*A | 2 |
A*AU | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (16)
- Isolated cWH basepair (2)
- Isolated cWH basepair (H) (1)
- Basepair signature
- cWW-L-R-cWW
- Heat map statistics
- Min 0.11 | Avg 0.31 | Max 0.59
Coloring options: