Motif IL_27393.7 Version IL_27393.7 of this group appears in releases 3.77 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 1-8 | 6-7 | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_4PHY_001 | 4PHY | 0.1764 | 2 | A+B | RNA (26-MER) + RNA (20-mer) | C | 5 | U | 6 | C | 7 | C | 8 | C | 9 | C | 12 | * | G | 40 | G | 41 | cWW | cWW | |
2 | IL_5CNR_001 | 5CNR | 0.0000 | 2 | A+B | RNA (16-mer) + RNA (11-mer) | C | 5 | U | 6 | A | 7 | C | 8 | C | 9 | C | 12 | * | G | 40 | G | 41 | cWW | cWW | |
3 | IL_6DVK_003 | 6DVK | 0.5590 | 1 | H | RNA (95-MER) | G | 28 | A | 29 | A | 30 | C | 31 | U | 32 | C | 34 | * | G | 61 | C | 62 | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CUCCCCAC*GG | 1 |
CUACCCAC*GG | 1 |
GAACUAC*GC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
UCCCCA* | 1 |
UACCCA* | 1 |
AACUA* | 1 |
Release history
Release | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 |
---|---|---|---|---|---|---|---|---|---|---|---|---|
Date | 2023-12-06 | 2024-01-03 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 | 2024-09-11 |
Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-L-cWW-L-L-R
- Heat map statistics
- Min 0.18 | Avg 0.29 | Max 0.56
Coloring options: