Motif IL_34442.1 Version IL_34442.1 of this group appears in releases 0.5 to 0.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 3-4 | 5-6 | 5-7 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2FQN_002 | 2FQN | 0.6284 | 2 | B+A | A | 38 | A | 39 | G | 42 | * | C | 7 | G | 8 | C | 9 | U | 10 | cWW | cWWa | cWW | |||
| 2 | IL_2O3Y_002 | 2O3Y | 0.5681 | 2 | Decoding loop related | B+A | A | 38 | A | 39 | G | 42 | * | C | 7 | G | 8 | C | 9 | U | 10 | cWW | cWWa | cWW | ||
| 3 | IL_3O58_045 | 3O58 | 0.4329 | 0 | 1 | A | 888 | U | 889 | C | 890 | * | G | 869 | G | 870 | U | 871 | U | 872 | cWW | cwW | cWW | ncSH | ncSH | |
| 4 | IL_1X8W_009 | 1X8W | 0.4265 | 0 | A | C | 316 | U | 317 | C | 318 | * | G | 331 | U | 403 | U | 404 | G | 405 | cWW | cWW | ||||
| 5 | IL_3O58_128 | 3O58 | 0.0000 | 1 | 1 | G | 2828 | U | 2829 | G | 2830 | * | U | 2858 | U | 2859 | U | 2861 | U | 2862 | ncWW | cwW | ncWW | |||
| 6 | IL_3O58_072 | 3O58 | 0.5453 | 1 | 1 | C | 1275 | U | 1276 | C | 1277 | * | G | 1262 | G | 1264 | U | 1265 | G | 1266 | cWW | ncwW | cWW | |||
| 7 | IL_2ZJR_039 | 2ZJR | 0.9549 | 1 | X | C | 1111 | U | 1112 | C | 1113 | * | G | 1098 | G | 1100 | U | 1101 | G | 1102 | cWW | cwW | cWW | |||
| 8 | IL_2XZM_014 | 2XZM | 0.8940 | 1 | A | G | 199 | U | 200 | A | 201 | * | U | 256 | G | 257 | U | 259 | C | 260 | cWW | cwW | cWW | ncSH | ||
| 9 | IL_3O30_058 | 3O30 | 0.9533 | 0 | 1 | U | 1627 | U | 1628 | G | 1629 | * | C | 1148 | G | 1149 | G | 1150 | A | 1151 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AAAAG*CGCU | 2 |
| CUC*GAGUG | 2 |
| AUC*GGUU | 1 |
| CUC*GUUG | 1 |
| GUG*UUUUU | 1 |
| GUA*UGAUC | 1 |
| UUG*CGGA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAA*GC | 2 |
| U*AGU | 2 |
| U*GU | 1 |
| U*UU | 1 |
| U*UUU | 1 |
| U*GAU | 1 |
| U*GG | 1 |
Release history
| Release | 0.5 |
|---|---|
| Date | 2011-12-08 |
| Status | > 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_34442.1 | Only in the parent motif |
|---|---|---|---|
| IL_22078.1 Compare | IL_2FQN_002 | IL_1X8W_009, IL_2ZJR_039, IL_3O58_128, IL_3O58_045, IL_2O3Y_002, IL_3O58_072, IL_3O30_058, IL_2XZM_014 | |
| IL_33923.2 Compare | IL_2ZJR_039 | IL_1X8W_009, IL_2FQN_002, IL_3O58_128, IL_3O58_045, IL_2O3Y_002, IL_3O58_072, IL_3O30_058, IL_2XZM_014 | IL_2ZJR_018, IL_1S72_029, IL_3F1H_021, IL_1S72_003, IL_2QBZ_004, IL_3F1H_042, IL_1MMS_002, IL_2GDI_005, IL_2GDI_001, IL_1MMS_004 |
| IL_70339.1 Compare | IL_2O3Y_002 | IL_1X8W_009, IL_2FQN_002, IL_2ZJR_039, IL_3O58_128, IL_3O58_045, IL_3O58_072, IL_3O30_058, IL_2XZM_014 | IL_429D_002 |
Children motifs
| Child motif | Common motif instances | Only in IL_34442.1 | Only in the child motif |
|---|---|---|---|
| IL_55938.1 Compare | IL_2ZJR_039, IL_2XZM_014 | IL_1X8W_009, IL_2FQN_002, IL_3O58_128, IL_3O58_045, IL_2O3Y_002, IL_3O58_072, IL_3O30_058 | IL_4A1B_038, IL_1XJR_001, IL_2ZJR_018, IL_1S72_029, IL_3U5F_014, IL_2QBZ_004, IL_1S72_003, IL_3UXR_022, IL_3U5H_061, IL_3U5H_111, IL_1S72_082, IL_4A1B_109, IL_3U5H_033, IL_3P49_006, IL_1MMS_002, IL_3P49_009, IL_3UXR_092, IL_1MMS_004 |
| IL_09348.1 Compare | IL_2FQN_002 | IL_1X8W_009, IL_2ZJR_039, IL_3O58_128, IL_3O58_045, IL_2O3Y_002, IL_3O58_072, IL_3O30_058, IL_2XZM_014 | IL_4A1B_070 |
| IL_27618.1 Compare | IL_1X8W_009 | IL_2FQN_002, IL_2ZJR_039, IL_3O58_128, IL_3O58_045, IL_2O3Y_002, IL_3O58_072, IL_3O30_058, IL_2XZM_014 | IL_4A1B_093, IL_3U5H_096, IL_2ZJR_059, IL_2DER_001, IL_4A1B_089, IL_1J2B_003, IL_3U5H_071, IL_1S72_072, IL_3NPB_004, IL_3U5H_012 |
- Annotations
-
- (8)
- Decoding loop related (1)
- Basepair signature
- Heat map statistics
- Min 0.13 | Avg 0.64 | Max 0.98
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