#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 5 61-62-53-4
1 IL_1O9M_0031O9M0.00001A+BEUBACTERIAL A-SITEG1491A1493G1494*C1407A1408C1409cWWcWW
2 IL_3LOA_0033LOA0.21111Decoding loop with one bulged AB+ARNA (23-mer)G1491A1493G1494*C1407A1408C1409cWWcWW
3 IL_420D_002420D0.66120B+ARNA (16-mer)A21G22U23*A10A11U12cWWcHWcWW
4 IL_420D_001420D0.65700A+BRNA (16-mer)A5G6U7*A26A27U28cWWcHWcWW
5 IL_2R22_0012R220.66370B+ARNA (13-mer)U19G20A21*U6G7A8cWWcHWcWW
6 IL_3CZW_0013CZW0.66280Isolated cWH basepairXRNA (16-mer)U7G8A9*U10||||2_555G11||||2_555A12||||2_555cWWcHWcWW
7 IL_3CZW_0023CZW0.66280Isolated cWH basepairXRNA (16-mer)U7||||2_555G8||||2_555A9||||2_555*U10G11A12cWWcHWcWW
8 IL_3F1H_0623F1H0.98620A23S RRNAU1995C1996G1997*C1663A1664A1665cWWtWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
UGA*UGA3
GAAG*CAC2
AGU*AAU2
UCG*CAA1
Non-Watson-Crick part of the motif
SequenceCounts
G*G3
AA*A2
G*A2
C*A1

Release history

Release0.1
Date2011-12-08
StatusNew id, no parents

Parent motifs

This motif has no parent motifs.

Children motifs

Child motifCommon motif instancesOnly in IL_09381.1Only in the child motif
IL_29746.1
Compare
IL_2R22_001, IL_3CZW_001, IL_3CZW_002, IL_420D_002, IL_420D_001IL_3F1H_062, IL_3LOA_003, IL_1O9M_003IL_3F1H_041, IL_406D_002
IL_90629.1
Compare
IL_3F1H_062, IL_3LOA_003, IL_1O9M_003IL_2R22_001, IL_3CZW_001, IL_3CZW_002, IL_420D_002, IL_420D_001IL_2ZJR_019, IL_2ZJR_013, IL_2ZJR_010, IL_1NLC_002, IL_1T0E_002, IL_1NLC_001, IL_1O9M_004, IL_1S72_047, IL_405D_002, IL_405D_001, IL_1ZH5_001, IL_2FQN_001, IL_1YZ9_002, IL_2FQN_004, IL_2O3Y_004, IL_2O3Y_001, IL_1FJG_058, IL_3NJ6_002, IL_2O3X_004, IL_1Z7F_002, IL_1FJG_056, IL_1Z7F_001, IL_3BNL_004, IL_3BNL_001, IL_3BNL_002, IL_2ZJR_090, IL_3CUN_002, IL_3F1H_085, IL_3F1H_080, IL_3F1H_081, IL_2ZJR_036, IL_2ZJR_030, IL_2QEK_001, IL_1FJG_044, IL_1ZEV_004, IL_1ZEV_005, IL_1ZEV_006, IL_1ZEV_001, IL_1ZEV_002, IL_1ZEV_003, IL_1U9S_007, IL_2O3V_004, IL_3F1H_014, IL_2O3V_001, IL_3NJ7_001, IL_2ZJR_025, IL_3NJ7_002, IL_3NJ7_003, IL_2ZJR_029, IL_3NJ7_006, IL_3NJ7_004, IL_3NJ7_005, IL_3BNQ_012, IL_1KFO_003, IL_1KFO_002, IL_3F1H_039, IL_5MSF_001, IL_5MSF_002, IL_2ZJR_053, IL_1FJG_062, IL_1S72_085, IL_3BNQ_001, IL_3BNQ_006, IL_3BNQ_007, IL_3F1H_033, IL_2ZI0_001, IL_3BNP_001, IL_3D0U_006, IL_3BNP_004, IL_3BNT_006, IL_3BNT_001, IL_157D_002, IL_1MWL_004, IL_157D_001, IL_1MWL_001, IL_1T0D_002, IL_1MZP_001, IL_1T0D_004, IL_3F1H_016, IL_1S72_095, IL_1FJG_010, IL_3DIR_006, IL_3F1H_024, IL_2ZKO_001, IL_2ZJR_100, IL_2ZJR_107, IL_1RPU_001, IL_1YZ9_001, IL_1FJG_006, IL_3F1H_094, IL_2OE5_001, IL_3E5C_001, IL_3MEI_002, IL_2ZJR_042, IL_2Q1R_001, IL_1S72_024, IL_1L9A_007, IL_3F1H_054, IL_3GLP_002, IL_3GLP_003, IL_3NJ6_001, IL_3GLP_001, IL_3GLP_004, IL_3FO4_001, IL_1XJR_003, IL_1ZX7_008, IL_1ZX7_006, IL_1ZX7_004, IL_1ZX7_002, IL_3HL2_002, IL_2Q1R_002, IL_2ZJR_079, IL_3F1H_043, IL_3F1H_113, IL_3HHN_004, IL_3HHN_002
Annotations
  • (5)
  • Isolated cWH basepair (2)
  • Decoding loop with one bulged A (1)
  • Basepair signature
    Heat map statistics
    Min 0.04 | Avg 0.48 | Max 0.99
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