#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 5 61-62-53-4
1 IL_420D_001420D0.29130B+ARNA (16-mer)A26A27U28*A5G6U7cWWcWHcWW
2 IL_406D_002406D0.27700Isolated cWH basepairA+ERNA (17-mer)U8||AG9||AG10||A*U25||AG26||AG27||AcWWncWHcWW
3 IL_2R22_0012R220.00000A+BRNA (13-mer)U6G7A8*U19G20A21cWWcWHcWW
4 IL_3CZW_0013CZW0.06850Isolated cWH basepairXRNA (16-mer)U10||||2_555G11||||2_555A12||||2_555*U7G8A9cWWcWHcWW
5 IL_3CZW_0023CZW0.06850Isolated cWH basepairXRNA (16-mer)U10G11A12*U7||||2_555G8||||2_555A9||||2_555cWWcWHcWW
6 IL_420D_002420D0.39420A+BRNA (16-mer)A10A11U12*A21G22U23cWWcWHcWW

3D structures

Complete motif including flanking bases
SequenceCounts
UGA*UGA3
AAU*AGU2
UGG*UGG1
Non-Watson-Crick part of the motif
SequenceCounts
G*G4
A*G2

Release history

Release0.3
Date2011-12-08
StatusUpdated, 1 parent

Parent motifs

Parent motifCommon motif instancesOnly in IL_29746.2Only in the parent motif
IL_29746.1
Compare
IL_420D_002, IL_420D_001, IL_2R22_001, IL_3CZW_001, IL_3CZW_002, IL_406D_002IL_3F1H_041

Children motifs

Child motifCommon motif instancesOnly in IL_29746.2Only in the child motif
IL_29746.3
Compare
IL_420D_002, IL_420D_001, IL_2R22_001, IL_3CZW_001, IL_3CZW_002, IL_406D_002IL_3F1H_062, IL_3LOA_003
Annotations
  • (3)
  • Isolated cWH basepair (3)
  • Basepair signature
    Heat map statistics
    Min 0.04 | Avg 0.23 | Max 0.54
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