#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 5 61-62-53-4
1 IL_420D_002420D0.91320A+BRNA (16-mer)A10A11U12*A21G22U23cWWcWHcWW
2 IL_420D_001420D0.68610B+ARNA (16-mer)A26A27U28*A5G6U7cWWcWHcWW
3 IL_3LOA_0033LOA0.29131Decoding loop with one bulged AA+BRNA (21-mer) + RNA (23-mer)C1407A1408C1409*G1491A1493G1494cWWcWW
4 IL_3F1H_0623F1H0.27700A23S RRNAC1663A1664A1665*U1995C1996G1997cWWtWWcWW
5 IL_2R22_0012R220.00000A+BRNA (13-mer)U6G7A8*U19G20A21cWWcWHcWW
6 IL_3CZW_0013CZW0.06850Isolated cWH basepairXRNA (16-mer)U10||||2_555G11||||2_555A12||||2_555*U7G8A9cWWcWHcWW
7 IL_3CZW_0023CZW0.06850Isolated cWH basepairXRNA (16-mer)U10G11A12*U7||||2_555G8||||2_555A9||||2_555cWWcWHcWW
8 IL_406D_002406D0.39420Isolated cWH basepairA+ERNA (17-mer)U8||AG9||AG10||A*U25||AG26||AG27||AcWWncWHcWW

3D structures

Complete motif including flanking bases
SequenceCounts
UGA*UGA3
AAU*AGU2
CAC*GAAG1
CAA*UCG1
UGG*UGG1
Non-Watson-Crick part of the motif
SequenceCounts
G*G4
A*G2
A*AA1
A*C1

Release history

Release0.4
Date2011-12-08
StatusUpdated, 2 parents

Parent motifs

Parent motifCommon motif instancesOnly in IL_29746.3Only in the parent motif
IL_29746.2
Compare
IL_420D_002, IL_420D_001, IL_2R22_001, IL_3CZW_001, IL_3CZW_002, IL_406D_002IL_3F1H_062, IL_3LOA_003
IL_90629.1
Compare
IL_3F1H_062, IL_3LOA_003IL_420D_002, IL_420D_001, IL_2R22_001, IL_3CZW_001, IL_3CZW_002, IL_406D_002IL_2ZJR_019, IL_2ZJR_013, IL_2ZJR_010, IL_1NLC_002, IL_2O3X_004, IL_1NLC_001, IL_1O9M_004, IL_1O9M_003, IL_1S72_047, IL_157D_002, IL_405D_001, IL_1ZH5_001, IL_1YZ9_001, IL_1YZ9_002, IL_2FQN_004, IL_2O3Y_004, IL_2O3Y_001, IL_1FJG_058, IL_3GLP_003, IL_1T0E_002, IL_1Z7F_002, IL_1FJG_056, IL_1Z7F_001, IL_3BNL_004, IL_3BNL_001, IL_3BNL_002, IL_2ZJR_090, IL_3CUN_002, IL_3F1H_085, IL_3F1H_080, IL_3F1H_081, IL_2ZJR_036, IL_2ZJR_030, IL_2QEK_001, IL_1FJG_044, IL_1ZEV_004, IL_1ZEV_005, IL_1ZEV_006, IL_1ZEV_001, IL_1ZEV_002, IL_1ZEV_003, IL_3F1H_016, IL_2O3V_004, IL_3F1H_014, IL_2O3V_001, IL_2ZJR_029, IL_2ZJR_025, IL_3NJ7_002, IL_3NJ7_003, IL_3NJ7_001, IL_3NJ7_006, IL_3NJ7_004, IL_3NJ7_005, IL_3BNQ_012, IL_1KFO_003, IL_1KFO_002, IL_3BNP_001, IL_5MSF_001, IL_5MSF_002, IL_2ZJR_053, IL_1U9S_007, IL_1FJG_062, IL_1S72_085, IL_3BNQ_001, IL_3BNQ_006, IL_3BNQ_007, IL_3F1H_033, IL_2ZI0_001, IL_3F1H_039, IL_3D0U_006, IL_3BNP_004, IL_3BNT_006, IL_3BNT_001, IL_405D_002, IL_1MWL_004, IL_157D_001, IL_2ZJR_042, IL_1T0D_002, IL_1MZP_001, IL_1T0D_004, IL_1S72_095, IL_1FJG_010, IL_3DIR_006, IL_3F1H_024, IL_2ZKO_001, IL_2ZJR_100, IL_2ZJR_107, IL_1RPU_001, IL_2FQN_001, IL_1FJG_006, IL_3F1H_094, IL_2OE5_001, IL_3E5C_001, IL_2Q1R_002, IL_1MWL_001, IL_2Q1R_001, IL_3F1H_113, IL_1L9A_007, IL_3F1H_054, IL_3GLP_002, IL_3NJ6_002, IL_3NJ6_001, IL_3GLP_001, IL_3GLP_004, IL_3FO4_001, IL_1XJR_003, IL_1ZX7_008, IL_1ZX7_006, IL_1ZX7_004, IL_1ZX7_002, IL_3HL2_002, IL_3MEI_002, IL_2ZJR_079, IL_3F1H_043, IL_1S72_024, IL_3HHN_004, IL_3HHN_002

Children motifs

Child motifCommon motif instancesOnly in IL_29746.3Only in the child motif
IL_93479.1
Compare
IL_420D_002, IL_420D_001, IL_2R22_001, IL_3CZW_001, IL_3CZW_002, IL_406D_002IL_3F1H_062, IL_3LOA_003IL_1X8W_005, IL_2AW7_011, IL_1GID_006, IL_2XXA_011, IL_2XXA_004, IL_1GID_013
IL_95015.1
Compare
IL_3LOA_003IL_420D_002, IL_420D_001, IL_3F1H_062, IL_2R22_001, IL_3CZW_001, IL_3CZW_002, IL_406D_002IL_2XZM_064, IL_3O58_082, IL_2QBG_065, IL_3O30_064, IL_2QEK_002, IL_1S72_062, IL_2ZJR_063, IL_3O58_095
Annotations
  • (4)
  • Isolated cWH basepair (3)
  • Decoding loop with one bulged A (1)
  • Basepair signature
    Heat map statistics
    Min 0.04 | Avg 0.47 | Max 1.06
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