Motif IL_30542.2 Version IL_30542.2 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 1-8 | 2-7 | 5-6 | 7-8 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_6DCC_001 | 6DCC | 0.5289 | 0 | B | human 7SK RNA stem-loop 1 proximal methylated | C | 102 | C | 103 | G | 104 | C | 105 | U | 106 | * | A | 3 | U | 4 | G | 5 | cWW | cWW | ||
| 2 | IL_4V9F_043 | 4V9F | 0.0000 | 2 | 0 | LSU rRNA | C | 1179 | U | 1180 | A | 1181 | C | 1182 | C | 1183 | * | G | 1163 | A | 1166 | G | 1167 | cWW | ncWW | cWW | |
| 3 | IL_7A0S_039 | 7A0S | 0.8439 | 2 | X | LSU rRNA | C | 1087 | A | 1088 | C | 1089 | C | 1090 | C | 1091 | * | G | 1070 | G | 1073 | G | 1074 | cWW | cWW | ncSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCGCU*AUG | 1 |
| CUACC*GUGAG | 1 |
| CACCC*GUUGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CGC*U | 1 |
| UAC*UGA | 1 |
| ACC*UUG | 1 |
- Annotations
-
- (3)
- Basepair signature
- cWW-L-R-L-L-cWW
- Heat map statistics
- Min 0.53 | Avg 0.52 | Max 0.97
Coloring options: