Motif IL_30840.3 Version IL_30840.3 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 3-10 | 4-7 | 4-9 | 5-8 | 6-7 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4A1B_014 | 4A1B | 0.9358 | 1 | 1 | 26S RRNA | G | 430 | A | 431 | G | 432 | A | 434 | A | 435 | U | 436 | * | A | 646 | U | 647 | G | 648 | G | 649 | C | 650 | cWW | ncWW | ntSH | ncWW | cWW | ||
| 2 | IL_4BPP_010 | 4BPP | 0.2895 | 0 | A | 18S RRNA | U | 113 | U | 114 | A | 115 | U | 116 | U | 117 | U | 118 | * | A | 286 | U | 287 | C | 288 | U | 289 | A | 290 | cWW | cwW | ntHS | cWw | cWW | ||
| 3 | IL_4CUX_010 | 4CUX | 0.2075 | 0 | 2 | 18S RRNA | U | 117 | U | 118 | A | 119 | U | 120 | U | 121 | U | 122 | * | A | 295 | U | 296 | U | 297 | C | 298 | A | 299 | cWW | ncBW | ncWw | cWW | |||
| 4 | IL_3U5F_010 | 3U5F | 0.0000 | 0 | 6 | 18S rRNA | U | 117 | U | 118 | A | 119 | U | 120 | U | 121 | U | 122 | * | A | 295 | U | 296 | U | 297 | C | 298 | A | 299 | cWW | ntHS | cWw | cWw | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUAUUU*AUUCA | 2 |
| GAGCAAU*AUGGC | 1 |
| UUAUUU*AUCUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAUU*UUC | 2 |
| AGCAA*UGG | 1 |
| UAUU*UCU | 1 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-20 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_30840.3 | Only in the parent motif |
|---|---|---|---|
| IL_30840.2 Compare | IL_3U5F_010, IL_4A1B_014, IL_4BPP_010 | IL_4CUX_010 |
Children motifs
| Child motif | Common motif instances | Only in IL_30840.3 | Only in the child motif |
|---|---|---|---|
| IL_38078.1 Compare | IL_3U5F_010, IL_4A1B_014, IL_4BPP_010, IL_4CUX_010 | IL_1VWW_072, IL_1VWW_044, IL_1VX2_010, IL_1VWW_028, IL_1VWW_042 |
- Annotations
-
- (4)
- Basepair signature
- cWW-cWW-L-R-L-cWW-cWW
- Heat map statistics
- Min 0.21 | Avg 0.45 | Max 0.99
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