Motif IL_32711.1 Version IL_32711.1 of this group appears in releases 3.88 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-8 | 2-9 | 3-7 | 3-8 | 4-7 | 5-6 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5BTM_001 | 5BTM | 0.2106 | 0 | A | RNA (55-mer) | U | 10 | U | 11 | C | 12 | U | 13 | A | 14 | * | U | 42 | U | 43 | C | 44 | U | 45 | A | 46 | cWW | ncWW | cwW | ncWw | cwW | cWW | ||
| 2 | IL_8SP9_002 | 8SP9 | 0.1643 | 0 | C | tRNA scaffold,CVB3 Cloverleaf RNA | C | 99 | U | 100 | U | 101 | U | 102 | G | 103 | * | C | 82 | U | 83 | C | 84 | U | 85 | G | 86 | cWW | ncwW | ncWW | cWw | cWW | |||
| 3 | IL_8DP3_002 | 8DP3 | 0.0838 | 0 | R | RNA (90-MER) | C | 54 | U | 55 | C | 56 | U | 57 | G | 58 | * | C | 71 | U | 72 | U | 73 | U | 74 | G | 75 | cWW | cwW | ncWW | cWW | cWw | cWW | ||
| 4 | IL_8VM9_004 | 8VM9 | 0.0000 | 0 | R | RNA (85-MER) | C | 48 | U | 49 | C | 50 | U | 51 | G | 52 | * | C | 68 | U | 69 | U | 70 | U | 71 | G | 72 | cWW | cwW | ncWW | cWW | cWw | cWW | ||
| 5 | IL_8VM8_003 | 8VM8 | 0.0849 | 0 | R | RNA (93-MER) | C | 54 | U | 55 | C | 56 | U | 57 | G | 58 | * | C | 74 | U | 75 | U | 76 | U | 77 | G | 78 | cWW | cwW | cWW | cWw | cWW | |||
| 6 | IL_8VMA_004 | 8VMA | 0.1289 | 0 | C | RNA (88-MER) | A | 71 | C | 72 | U | 73 | U | 74 | G | 75 | * | C | 51 | U | 52 | C | 53 | C | 54 | U | 55 | cWW | ncwW | ncWW | cWw | cWW | |||
| 7 | IL_8VMB_003 | 8VMB | 0.1852 | 0 | R | RNA (83-MER) | C | 51 | U | 52 | C | 53 | C | 54 | U | 55 | * | A | 68 | C | 69 | U | 70 | U | 71 | G | 72 | cWW | cwW | cWW | ncwW | cWW | |||
| 8 | IL_8S95_002 | 8S95 | 0.2041 | 0 | C | Lysine tRNA scaffold,Poliovirus cloverleaf RNA | C | 101 | C | 102 | U | 103 | U | 104 | G | 105 | * | C | 84 | U | 85 | C | 86 | C | 87 | G | 88 | cWW | ncwW | cWW | ncWw | cWW | |||
| 9 | IL_7VYX_008 | 7VYX | 0.3917 | 0 | C | sgRNA | G | 11 | A | 12 | C | 13 | U | 14 | U | 15 | * | G | 51 | U | 52 | G | 53 | C | 54 | C | 55 | cWW | ncWWa | ncWW | ncWw | ncWWa |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUCUG*CUUUG | 3 |
| UUCUA*UUCUA | 1 |
| CUUUG*CUCUG | 1 |
| ACUUG*CUCCU | 1 |
| CUCCU*ACUUG | 1 |
| CCUUG*CUCCG | 1 |
| GACUU*GUGCC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCU*UUU | 3 |
| CUU*UCC | 2 |
| UCU*UCU | 1 |
| UUU*UCU | 1 |
| UCC*CUU | 1 |
| ACU*UGC | 1 |
Release history
| Release | 3.88 |
|---|---|
| Date | 2024-09-11 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Heat map statistics
- Min 0.08 | Avg 0.20 | Max 0.43
Coloring options: