Motif IL_33509.1 Version IL_33509.1 of this group appears in releases 0.5 to 0.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | 5 | 6 | 1-6 | 2-3 | 2-5 | 4-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1S72_101 | 1S72 | 0 | 0 | Major groove minor groove platform; mini C-loop (H) | 9 | 5S rRNA | C | 29 | C | 30 | * | G | 50 | A | 51 | A | 52 | G | 53 | cWW | cWW | cSW | cSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CC*GAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *AA | 1 |
Release history
| Release | 0.5 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_33509.1 | Only in the parent motif |
|---|---|---|---|
| IL_17977.2 Compare | IL_1S72_101 | IL_1S03_003, IL_1S03_007, IL_1U9S_004, IL_1FJG_025, IL_1U9S_002, IL_1S72_068, IL_1I6U_002, IL_1I6U_004, IL_2ZJR_069 |
Children motifs
| Child motif | Common motif instances | Only in IL_33509.1 | Only in the child motif |
|---|---|---|---|
| IL_92027.1 Compare | IL_1S72_101 | IL_1S03_003, IL_1FJG_025, IL_1S03_007, IL_3Q1Q_005, IL_1U9S_004, IL_1U9S_005, IL_1U9S_002, IL_2QBG_074, IL_1S72_068, IL_1I6U_002, IL_1I6U_004, IL_2ZJR_069, IL_4A1C_006, IL_3U5F_040, IL_2AW7_032, IL_4A1B_019, IL_3U5H_091 |
- Annotations
-
- Major groove minor groove platform; mini C-loop (H) (1)
- Basepair signature
- Heat map statistics
- Min 0.00 | Avg 0.00 | Max 0.00
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