Motif IL_34156.2 Version IL_34156.2 of this group appears in releases 0.7 to 0.8
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3U5F_012 | 3U5F | 0.2821 | 0 | 6 | 18S rRNA | U | 150 | G | 151 | U | 152 | * | A | 162 | G | 163 | A | 164 | cWW | cWW | |
| 2 | IL_1SI3_001 | 1SI3 | 0.0000 | 0 | Isolated non-canonical cWW contact | B | RNA (9-mer) | U | 403||||4_675 | G | 404||||4_675 | A | 405||||4_675 | * | U | 403 | G | 404 | A | 405 | cWW | cWW |
| 3 | IL_2ZI0_001 | 2ZI0 | 0.6391 | 0 | Isolated near basepair | C+D | RNA (21-mer) | U | 9 | U | 10 | A | 11 | * | U | 9 | U | 10 | A | 11 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGU*AGA | 1 |
| UGA*UGA | 1 |
| UUA*UUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*G | 2 |
| U*U | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in IL_34156.2 | Only in the parent motif |
|---|---|---|---|
| IL_34156.1 Compare | IL_3U5F_012, IL_1SI3_001 | IL_2ZI0_001 | IL_3UXR_025 |
| IL_90459.1 Compare | IL_2ZI0_001 | IL_3U5F_012, IL_1SI3_001 | IL_3U5F_074, IL_2QBG_040, IL_2Y9B_001, IL_3UXR_041, IL_4A1B_129, IL_3U5H_138, IL_4A1C_001 |
Children motifs
| Child motif | Common motif instances | Only in IL_34156.2 | Only in the child motif |
|---|---|---|---|
| IL_34156.3 Compare | IL_3U5F_012, IL_1SI3_001 | IL_2ZI0_001 | |
| IL_98556.2 Compare | IL_2ZI0_001 | IL_3U5F_012, IL_1SI3_001 | IL_2QBG_043, IL_2ZJR_038, IL_1QA6_001 |
- Annotations
-
- Isolated non-canonical cWW contact (1)
- Isolated near basepair (1)
- (1)
- Basepair signature
- cWW-L-R-cWW
- Heat map statistics
- Min 0.28 | Avg 0.36 | Max 0.70
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