RNA 3D Hub //

Motif IL_90459.1 Version IL_90459.1 of this group appears in releases 0.6 to 0.6

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2 3break 4 5 61-62-53-4
1 IL_4A1B_1294A1B0.834531 LSU rRNAG3286U3287A3288*U3329U3330C3334cWWcWwcWW
2 IL_4A1C_0014A1C0.751612 5.8S rRNAC67A68A69*U94C95G97cWWncWScWW
3 IL_2Y9B_0012Y9B0.80300VHOMO SAPIENS U4A SNRNAU825U826G827*C802C803G804cWWcWWcWW
4 IL_2ZI0_0012ZI00.00000Isolated near basepairC+DRNA (21-mer)U9U10A11*U9U10A11cWWcWW
5 IL_2QBG_0402QBG0.51861B LSU rRNAC1121G1122C1123*G1031A1032G1034cWWcWWcWW
6 IL_3UXR_0413UXR0.52381A LSU rRNAC1121G1122C1123*G1031A1032G1034cWWcWWcWW
7 IL_3U5F_0743U5F0.791826 SSU rRNAU1369U1372C1373*G1352U1353G1354cWWcWwcWW
8 IL_3U5H_1383U5H0.997435 LSU rRNAG3328U3329A3330*U3373U3374C3378cWWcWwcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGC*GAUG2
GUA*UUCAGC1
CAA*UCAG1
UUG*CCG1
UUA*UUA1
UUAUC*GUG1
GUA*UUAAGC1
Non-Watson-Crick part of the motif
SequenceCounts
G*AU2
U*UCAG1
A*CA1
U*C1
U*U1
UAU*U1
U*UAAG1

Release history

Release0.6
Date2012-04-02
StatusNew id, 2 parents

Parent motifs

Parent motifCommon motif instancesOnly in IL_90459.1Only in the parent motif
IL_46873.1
Compare		IL_2ZI0_001IL_3U5F_074, IL_2QBG_040, IL_4A1C_001, IL_3UXR_041, IL_4A1B_129, IL_3U5H_138, IL_2Y9B_001IL_3PYO_024
IL_24421.1
Compare		IL_2QBG_040IL_3U5F_074, IL_3U5H_138, IL_4A1C_001, IL_2ZI0_001, IL_3UXR_041, IL_4A1B_129, IL_2Y9B_001IL_2ZJR_019, IL_3KTW_002, IL_2ZJR_013, IL_2ZJR_010, IL_2AW7_052, IL_1NLC_002, IL_1T0E_002, IL_1NLC_001, IL_3O58_063, IL_2XZM_075, IL_3O58_061, IL_3O30_062, IL_1O9M_004, IL_3O58_145, IL_1S72_047, IL_2QBG_020, IL_2XZM_036, IL_2XZM_037, IL_405D_002, IL_405D_001, IL_1ZH5_001, IL_3O58_097, IL_2FQN_001, IL_2FQN_004, IL_2QBG_096, IL_2O3Y_004, IL_2O3Y_001, IL_2QBG_018, IL_1FJG_058, IL_3GLP_003, IL_2O3X_004, IL_1Z7F_002, IL_1FJG_056, IL_1Z7F_001, IL_3O58_148, IL_2XZM_006, IL_2XZM_001, IL_3BNL_004, IL_3BNL_001, IL_2ZJR_090, IL_2XZM_085, IL_3CUN_002, IL_2XZM_086, IL_2XZM_082, IL_3O58_048, IL_2QBG_083, IL_3O58_040, IL_2ZJR_036, IL_3O30_003, IL_2ZJR_030, IL_3O58_163, IL_3O58_022, IL_2QEK_001, IL_1FJG_044, IL_2XZM_015, IL_1ZEV_004, IL_1ZEV_005, IL_1ZEV_006, IL_3O30_084, IL_1ZEV_001, IL_1ZEV_002, IL_1ZEV_003, IL_1U9S_007, IL_2O3V_004, IL_1U6B_001, IL_3O30_089, IL_2O3V_001, IL_2XZM_090, IL_3PYO_039, IL_3NJ7_003, IL_3PYO_033, IL_2ZJR_029, IL_2ZJR_025, IL_3NJ7_002, IL_3O30_015, IL_3NJ7_001, IL_3NJ7_006, IL_3NJ7_004, IL_3NJ7_005, IL_2AW7_009, IL_3PYO_075, IL_2XZM_034, IL_1MFQ_003, IL_1MFQ_002, IL_3O30_091, IL_3A3A_001, IL_1KFO_003, IL_1KFO_002, IL_5MSF_001, IL_5MSF_002, IL_3O30_020, IL_2XZM_072, IL_1FJG_062, IL_1T0D_004, IL_1S72_085, IL_3BNQ_012, IL_3BNQ_001, IL_3G78_008, IL_3BNQ_006, IL_3BNQ_007, IL_3BNP_001, IL_3D0U_006, IL_3BNP_004, IL_3PYO_016, IL_3PYO_014, IL_3BNT_006, IL_3BNT_001, IL_3IVK_004, IL_157D_002, IL_1MWL_004, IL_157D_001, IL_1MWL_001, IL_3PYO_085, IL_3O58_132, IL_1MZP_001, IL_3O58_136, IL_2XZM_043, IL_2XZM_020, IL_2AW7_062, IL_1FJG_010, IL_3O58_032, IL_3DIR_006, IL_2ZKO_001, IL_1FJG_006, IL_2ZJR_100, IL_3IVK_002, IL_3O58_086, IL_3O58_126, IL_3O30_041, IL_3O58_009, IL_3O58_008, IL_2OE5_001, IL_2XZM_058, IL_3O30_033, IL_2Q1R_002, IL_2Q1R_001, IL_1S72_024, IL_1T0D_002, IL_3GLP_002, IL_3NJ6_002, IL_3NJ6_001, IL_3GLP_001, IL_3GLP_004, IL_3FO4_001, IL_1XJR_003, IL_1U6B_005, IL_1ZX7_008, IL_3O30_086, IL_1ZX7_006, IL_1ZX7_004, IL_1ZX7_002, IL_3O58_134, IL_3O30_052, IL_3O58_151, IL_1UN6_005, IL_2QBG_034, IL_2QBG_030, IL_2ZJR_079, IL_2AW7_064

Children motifs

Child motifCommon motif instancesOnly in IL_90459.1Only in the child motif
IL_90459.2
Compare		IL_3U5F_074, IL_2QBG_040, IL_4A1C_001, IL_2Y9B_001, IL_4A1B_129, IL_3U5H_138IL_3UXR_041, IL_2ZI0_001IL_3V2F_041, IL_1S72_085
IL_34156.2
Compare		IL_2ZI0_001IL_3U5F_074, IL_2QBG_040, IL_2Y9B_001, IL_3UXR_041, IL_4A1B_129, IL_3U5H_138, IL_4A1C_001IL_3U5F_012, IL_1SI3_001
Annotations
  • (7)
  • Isolated near basepair (1)
    • Basepair signature
    06_cWW-cWW-cWW
    Heat map statistics
    Min 0.08 | Avg 0.56 | Max 1.00
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    Coloring options:

    IL_4A1B_129:IL_4A1B_129 = 0IL_4A1B_129:IL_4A1C_001 = 0.458IL_4A1B_129:IL_2Y9B_001 = 0.4699IL_4A1B_129:IL_2ZI0_001 = 0.8345IL_4A1B_129:IL_2QBG_040 = 0.7095IL_4A1B_129:IL_3UXR_041 = 0.7041IL_4A1B_129:IL_3U5F_074 = 0.7753IL_4A1B_129:IL_3U5H_138 = 0.8169IL_4A1C_001:IL_4A1B_129 = 0.458IL_4A1C_001:IL_4A1C_001 = 0IL_4A1C_001:IL_2Y9B_001 = 0.13IL_4A1C_001:IL_2ZI0_001 = 0.7516IL_4A1C_001:IL_2QBG_040 = 0.6012IL_4A1C_001:IL_3UXR_041 = 0.5988IL_4A1C_001:IL_3U5F_074 = 0.6196IL_4A1C_001:IL_3U5H_138 = 0.8289IL_2Y9B_001:IL_4A1B_129 = 0.4699IL_2Y9B_001:IL_4A1C_001 = 0.13IL_2Y9B_001:IL_2Y9B_001 = 0IL_2Y9B_001:IL_2ZI0_001 = 0.803IL_2Y9B_001:IL_2QBG_040 = 0.6578IL_2Y9B_001:IL_3UXR_041 = 0.6534IL_2Y9B_001:IL_3U5F_074 = 0.6901IL_2Y9B_001:IL_3U5H_138 = 0.8531IL_2ZI0_001:IL_4A1B_129 = 0.8345IL_2ZI0_001:IL_4A1C_001 = 0.7516IL_2ZI0_001:IL_2Y9B_001 = 0.803IL_2ZI0_001:IL_2ZI0_001 = 0IL_2ZI0_001:IL_2QBG_040 = 0.5186IL_2ZI0_001:IL_3UXR_041 = 0.5238IL_2ZI0_001:IL_3U5F_074 = 0.7918IL_2ZI0_001:IL_3U5H_138 = 0.9974IL_2QBG_040:IL_4A1B_129 = 0.7095IL_2QBG_040:IL_4A1C_001 = 0.6012IL_2QBG_040:IL_2Y9B_001 = 0.6578IL_2QBG_040:IL_2ZI0_001 = 0.5186IL_2QBG_040:IL_2QBG_040 = 0IL_2QBG_040:IL_3UXR_041 = 0.0772IL_2QBG_040:IL_3U5F_074 = 0.4945IL_2QBG_040:IL_3U5H_138 = 0.6808IL_3UXR_041:IL_4A1B_129 = 0.7041IL_3UXR_041:IL_4A1C_001 = 0.5988IL_3UXR_041:IL_2Y9B_001 = 0.6534IL_3UXR_041:IL_2ZI0_001 = 0.5238IL_3UXR_041:IL_2QBG_040 = 0.0772IL_3UXR_041:IL_3UXR_041 = 0IL_3UXR_041:IL_3U5F_074 = 0.4866IL_3UXR_041:IL_3U5H_138 = 0.6731IL_3U5F_074:IL_4A1B_129 = 0.7753IL_3U5F_074:IL_4A1C_001 = 0.6196IL_3U5F_074:IL_2Y9B_001 = 0.6901IL_3U5F_074:IL_2ZI0_001 = 0.7918IL_3U5F_074:IL_2QBG_040 = 0.4945IL_3U5F_074:IL_3UXR_041 = 0.4866IL_3U5F_074:IL_3U5F_074 = 0IL_3U5F_074:IL_3U5H_138 = 0.7113IL_3U5H_138:IL_4A1B_129 = 0.8169IL_3U5H_138:IL_4A1C_001 = 0.8289IL_3U5H_138:IL_2Y9B_001 = 0.8531IL_3U5H_138:IL_2ZI0_001 = 0.9974IL_3U5H_138:IL_2QBG_040 = 0.6808IL_3U5H_138:IL_3UXR_041 = 0.6731IL_3U5H_138:IL_3U5F_074 = 0.7113IL_3U5H_138:IL_3U5H_138 = 0IL_4A1B_129IL_4A1C_001IL_2Y9B_001IL_2ZI0_001IL_2QBG_040IL_3UXR_041IL_3U5F_074IL_3U5H_138Discrepancy0.000.200.400.600.80
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