Motif IL_34156.1 Version IL_34156.1 of this group appears in releases 0.6 to 0.6
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3UXR_025 | 3UXR | 0.0000 | 1 | A | LSU rRNA | C | 844 | G | 845 | C | 846 | * | G | 931 | A | 933 | G | 934 | cWW | cWW | |
| 2 | IL_1SI3_001 | 1SI3 | 0.8598 | 0 | Isolated non-canonical cWW contact | B | RNA (9-mer) | U | 403 | G | 404 | A | 405 | * | U | 403||||4_675 | G | 404||||4_675 | A | 405||||4_675 | cWW | cWW |
| 3 | IL_3U5F_012 | 3U5F | 0.9467 | 0 | 6 | SSU rRNA | A | 162 | G | 163 | A | 164 | * | U | 150 | G | 151 | U | 152 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGC*GGAG | 1 |
| UGA*UGA | 1 |
| AGA*UGU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*G | 2 |
| G*GA | 1 |
Release history
| Release | 0.6 |
|---|---|
| Date | 2012-04-02 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_34156.1 | Only in the parent motif |
|---|---|---|---|
| IL_42829.1 Compare | IL_1SI3_001 | IL_3U5F_012, IL_3UXR_025 | IL_353D_001, IL_3O30_021, IL_2QBG_085, IL_2ZJR_053, IL_3O58_105, IL_3O58_029, IL_3O30_060, IL_2XZM_012, IL_3O30_025, IL_3O30_069, IL_3O58_026, IL_3O58_146, IL_3MEI_002, IL_2ZJR_042, IL_3O58_144, IL_1O9M_003, IL_3O30_036, IL_3PYO_052, IL_2XZM_060, IL_1M5O_003, IL_1YZ9_001, IL_1YZ9_002, IL_3O30_030, IL_3O58_059, IL_3PYO_041, IL_3PYO_103, IL_3O30_013, IL_2AW7_063, IL_3MOJ_002, IL_2XZM_069, IL_3O58_073, IL_3O58_019, IL_3O58_037, IL_2ZJR_107, IL_1RPU_001, IL_3O30_075, IL_2XZM_081, IL_1NBS_006, IL_1S72_095 |
Children motifs
| Child motif | Common motif instances | Only in IL_34156.1 | Only in the child motif |
|---|---|---|---|
| IL_34156.2 Compare | IL_3U5F_012, IL_1SI3_001 | IL_3UXR_025 | IL_2ZI0_001 |
- Annotations
-
- (2)
- Isolated non-canonical cWW contact (1)
- Basepair signature
- 06_cWW--cWW
- Heat map statistics
- Min 0.28 | Avg 0.46 | Max 0.95
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