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Motif IL_35167.1 Version IL_35167.1 of this group appears in releases 3.2 to 3.11

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5break 6 7 8 9 101-102-82-93-83-94-75-6
1 IL_4IOA_0954IOA0.68624tSH-tHS-tHW (H)X LSU rRNAU2615U2616G2617A2618G2619*C2754A2755A2756A2758G2762cWWtWHntSHtHScWW
2 IL_4WF9_0994WF90.66974tSH-tHS-tHWX LSU rRNAU2663U2664G2665A2666G2667*C2801A2802A2803A2805G2809cWWtWHtSHtHScWW
3 IL_4Y4O_2774Y4O0.66884tSH-tHS-tHW (H)2A LSU rRNAU2636U2637G2638A2639G2640*C2774A2775A2776A2778G2782cWWtWHtSHtHScWW
4 IL_4WF9_0514WF90.00000UAA/GANX LSU rRNAC1388U1389A1390A1391G1392*C1413G1414A1415U1416G1417cWWntWHtHScWW
5 IL_4IOA_0504IOA0.11150UAA/GAN (H)X LSU rRNAC1364U1365A1366A1367G1368*C1389G1390A1391U1392G1393cWWtWHncWWtHScWW
6 IL_5J7L_2925J7L0.13820UAA/GANDA LSU rRNAC1351U1352A1353A1354G1355*C1376G1377A1378U1379G1380cWWtWHncWWtHScWW
7 IL_4Y4O_2474Y4O0.64110UAA/GAN with extra pair (H)2A LSU rRNAU1851C1852A1853A1854G1855*C1887G1888A1889A1890G1891cWWtSHtHScWW
8 IL_4IOA_0694IOA0.74410UAA/GAN with extra pair (H)X LSU rRNAU1843C1844A1845A1846G1847*U1870G1871A1872A1873G1874ncWWntSHcWW
9 IL_4WF9_0734WF90.73400UAA/GAN with extra pairX LSU rRNAU1878U1879A1880A1881G1882*C1914G1915A1916A1917G1918cWWntSHcWW
10 IL_4WF9_0844WF90.87540Other ILX LSU rRNAG2217G2218C2219U2220U2221*A2122A2123U2124U2125C2126cWWncWWncWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
UUGAG*CAAGAUGAG3
CUAAG*CGAUG3
UCAAG*CGAAG1
UCAAG*UGAAG1
UUAAG*CGAAG1
GGCUU*AAUUC1
Non-Watson-Crick part of the motif
SequenceCounts
UGA*AAGAUGA3
UAA*GAU3
CAA*GAA2
UAA*GAA1
GCU*AUU1

Release history

Release3.33.43.53.63.73.83.93.103.23.11
Date2018-03-082018-04-062018-05-042018-06-012018-06-292018-07-272018-08-242018-09-212018-09-262018-10-19
StatusExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchNew id, no parentsExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • UAA/GAN with extra pair (H) (2)
  • tSH-tHS-tHW (H) (2)
  • UAA/GAN (2)
  • UAA/GAN (H) (1)
  • UAA/GAN with extra pair (1)
  • Other IL (1)
  • tSH-tHS-tHW (1)
    • Basepair signature
    cWW-R-tWH-L-tHS-cWW
    Heat map statistics
    Min 0.08 | Avg 0.60 | Max 0.94
    Help

    Coloring options:

    IL_4IOA_095:IL_4IOA_095 = 0IL_4IOA_095:IL_4WF9_099 = 0.0903IL_4IOA_095:IL_4Y4O_277 = 0.1IL_4IOA_095:IL_4WF9_051 = 0.6862IL_4IOA_095:IL_4IOA_050 = 0.7057IL_4IOA_095:IL_5J7L_292 = 0.7255IL_4IOA_095:IL_4Y4O_247 = 0.825IL_4IOA_095:IL_4IOA_069 = 0.9015IL_4IOA_095:IL_4WF9_073 = 0.8862IL_4IOA_095:IL_4WF9_084 = 0.8838IL_4WF9_099:IL_4IOA_095 = 0.0903IL_4WF9_099:IL_4WF9_099 = 0IL_4WF9_099:IL_4Y4O_277 = 0.0836IL_4WF9_099:IL_4WF9_051 = 0.6697IL_4WF9_099:IL_4IOA_050 = 0.6877IL_4WF9_099:IL_5J7L_292 = 0.7079IL_4WF9_099:IL_4Y4O_247 = 0.8157IL_4WF9_099:IL_4IOA_069 = 0.8926IL_4WF9_099:IL_4WF9_073 = 0.8791IL_4WF9_099:IL_4WF9_084 = 0.8747IL_4Y4O_277:IL_4IOA_095 = 0.1IL_4Y4O_277:IL_4WF9_099 = 0.0836IL_4Y4O_277:IL_4Y4O_277 = 0IL_4Y4O_277:IL_4WF9_051 = 0.6688IL_4Y4O_277:IL_4IOA_050 = 0.6894IL_4Y4O_277:IL_5J7L_292 = 0.7134IL_4Y4O_277:IL_4Y4O_247 = 0.8248IL_4Y4O_277:IL_4IOA_069 = 0.9032IL_4Y4O_277:IL_4WF9_073 = 0.8882IL_4Y4O_277:IL_4WF9_084 = 0.8589IL_4WF9_051:IL_4IOA_095 = 0.6862IL_4WF9_051:IL_4WF9_099 = 0.6697IL_4WF9_051:IL_4Y4O_277 = 0.6688IL_4WF9_051:IL_4WF9_051 = 0IL_4WF9_051:IL_4IOA_050 = 0.1115IL_4WF9_051:IL_5J7L_292 = 0.1382IL_4WF9_051:IL_4Y4O_247 = 0.6411IL_4WF9_051:IL_4IOA_069 = 0.7441IL_4WF9_051:IL_4WF9_073 = 0.734IL_4WF9_051:IL_4WF9_084 = 0.8754IL_4IOA_050:IL_4IOA_095 = 0.7057IL_4IOA_050:IL_4WF9_099 = 0.6877IL_4IOA_050:IL_4Y4O_277 = 0.6894IL_4IOA_050:IL_4WF9_051 = 0.1115IL_4IOA_050:IL_4IOA_050 = 0IL_4IOA_050:IL_5J7L_292 = 0.1041IL_4IOA_050:IL_4Y4O_247 = 0.6678IL_4IOA_050:IL_4IOA_069 = 0.7613IL_4IOA_050:IL_4WF9_073 = 0.7624IL_4IOA_050:IL_4WF9_084 = 0.9244IL_5J7L_292:IL_4IOA_095 = 0.7255IL_5J7L_292:IL_4WF9_099 = 0.7079IL_5J7L_292:IL_4Y4O_277 = 0.7134IL_5J7L_292:IL_4WF9_051 = 0.1382IL_5J7L_292:IL_4IOA_050 = 0.1041IL_5J7L_292:IL_5J7L_292 = 0IL_5J7L_292:IL_4Y4O_247 = 0.6844IL_5J7L_292:IL_4IOA_069 = 0.771IL_5J7L_292:IL_4WF9_073 = 0.7717IL_5J7L_292:IL_4WF9_084 = 0.9442IL_4Y4O_247:IL_4IOA_095 = 0.825IL_4Y4O_247:IL_4WF9_099 = 0.8157IL_4Y4O_247:IL_4Y4O_277 = 0.8248IL_4Y4O_247:IL_4WF9_051 = 0.6411IL_4Y4O_247:IL_4IOA_050 = 0.6678IL_4Y4O_247:IL_5J7L_292 = 0.6844IL_4Y4O_247:IL_4Y4O_247 = 0IL_4Y4O_247:IL_4IOA_069 = 0.3434IL_4Y4O_247:IL_4WF9_073 = 0.3382IL_4Y4O_247:IL_4WF9_084 = 0.795IL_4IOA_069:IL_4IOA_095 = 0.9015IL_4IOA_069:IL_4WF9_099 = 0.8926IL_4IOA_069:IL_4Y4O_277 = 0.9032IL_4IOA_069:IL_4WF9_051 = 0.7441IL_4IOA_069:IL_4IOA_050 = 0.7613IL_4IOA_069:IL_5J7L_292 = 0.771IL_4IOA_069:IL_4Y4O_247 = 0.3434IL_4IOA_069:IL_4IOA_069 = 0IL_4IOA_069:IL_4WF9_073 = 0.2293IL_4IOA_069:IL_4WF9_084 = 0.8581IL_4WF9_073:IL_4IOA_095 = 0.8862IL_4WF9_073:IL_4WF9_099 = 0.8791IL_4WF9_073:IL_4Y4O_277 = 0.8882IL_4WF9_073:IL_4WF9_051 = 0.734IL_4WF9_073:IL_4IOA_050 = 0.7624IL_4WF9_073:IL_5J7L_292 = 0.7717IL_4WF9_073:IL_4Y4O_247 = 0.3382IL_4WF9_073:IL_4IOA_069 = 0.2293IL_4WF9_073:IL_4WF9_073 = 0IL_4WF9_073:IL_4WF9_084 = 0.7895IL_4WF9_084:IL_4IOA_095 = 0.8838IL_4WF9_084:IL_4WF9_099 = 0.8747IL_4WF9_084:IL_4Y4O_277 = 0.8589IL_4WF9_084:IL_4WF9_051 = 0.8754IL_4WF9_084:IL_4IOA_050 = 0.9244IL_4WF9_084:IL_5J7L_292 = 0.9442IL_4WF9_084:IL_4Y4O_247 = 0.795IL_4WF9_084:IL_4IOA_069 = 0.8581IL_4WF9_084:IL_4WF9_073 = 0.7895IL_4WF9_084:IL_4WF9_084 = 0IL_4IOA_095IL_4WF9_099IL_4Y4O_277IL_4WF9_051IL_4IOA_050IL_5J7L_292IL_4Y4O_247IL_4IOA_069IL_4WF9_073IL_4WF9_084Discrepancy0.000.200.400.600.80
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