Motif IL_36612.1 Version IL_36612.1 of this group appears in releases 3.3 to 3.11

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2	break		3		4	1-4	2-3
1	IL_4Y4O_249	4Y4O	0.5249	2	Bulged stacked bases (H)	2A	LSU rRNA	G	1933	C	1934	*	G	1964	C	1967	cWW	cWW
2	IL_4WF9_076	4WF9	0.5656	2	Bulged stacked bases	X	LSU rRNA	G	1960	C	1961	*	G	1991	C	1994	cWW	cWW
3	IL_4V8P_249	4V8P	0.5378	2		D1	LSU rRNA	G	2271	C	2272	*	G	2302	U	2305	cWW	cWW
4	IL_4V9F_070	4V9F	0.3989	2	Bulged stacked bases	0	LSU rRNA	G	1974	C	1975	*	G	2005	U	2008	cWW	cWW
5	IL_5FQ5_002	5FQ5	0.0000	1	Single bulged U	A	tracrRNA	G	54	C	55	*	G	58	C	60	cWW	cWW
6	IL_5B2T_002	5B2T	0.0611	1	Single bulged U	A	tracrRNA	G	54	C	55	*	G	58	C	60	cWW	cWW
7	IL_4ZT0_004	4ZT0	0.0709	1	Single bulged U	D	tracrRNA	G	54	C	55	*	G	58	C	60	cWW	cWW
8	IL_5F9R_003	5F9R	0.1050	1	Single bulged U	A	tracrRNA	G	72	C	73	*	G	76	C	78	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GC*GUC	4
GC*GCAC	2
GC*GCAU	2

Non-Watson-Crick part of the motif

Sequence	Counts
*CA	4
*U	4

Release history

Release	3.3	3.4	3.5	3.6	3.7	3.8	3.9	3.10	3.11
Date	2018-03-08	2018-04-06	2018-05-04	2018-06-01	2018-06-29	2018-07-27	2018-08-24	2018-09-21	2018-10-19
Status	New id, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Single bulged U (4)
Bulged stacked bases (2)
(1)
Bulged stacked bases (H) (1)
Basepair signature: cWW-cWW
Heat map statistics: Min 0.03 | Avg 0.33 | Max 0.61

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Coloring options: Nucleotide numbers

Motif IL_36612.1 Version IL_36612.1 of this group appears in releases 3.3 to 3.11 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_36612.1 Version IL_36612.1 of this group appears in releases 3.3 to 3.11

Download

Csv

Json