Motif IL_36612.3 Version IL_36612.3 of this group appears in releases 3.20 to 3.24
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V9F_095 | 4V9F | 0.8610 | 3 | Bulged stacked bases | 0 | LSU rRNA | U | 2732 | U | 2733 | * | A | 2746 | G | 2750 | cWW | cWW |
| 2 | IL_4WF9_076 | 4WF9 | 0.5656 | 2 | Bulged stacked bases | X | LSU rRNA | G | 1960 | C | 1961 | * | G | 1991 | C | 1994 | cWW | cWW |
| 3 | IL_4Y4O_249 | 4Y4O | 0.5249 | 2 | Bulged stacked bases (H) | 2A | LSU rRNA | G | 1933 | C | 1934 | * | G | 1964 | C | 1967 | cWW | cWW |
| 4 | IL_5FQ5_002 | 5FQ5 | 0.0000 | 1 | Single bulged U | A | SGRNA | G | 54 | C | 55 | * | G | 58 | C | 60 | cWW | cWW |
| 5 | IL_5B2T_002 | 5B2T | 0.0611 | 1 | Single bulged U | A | Guide RNA | G | 54 | C | 55 | * | G | 58 | C | 60 | cWW | cWW |
| 6 | IL_4ZT0_004 | 4ZT0 | 0.0709 | 1 | Single bulged U | D | single-guide RNA | G | 54 | C | 55 | * | G | 58 | C | 60 | cWW | cWW |
| 7 | IL_5F9R_003 | 5F9R | 0.1050 | 1 | Single bulged U | A | RNA (116-MER) | G | 72 | C | 73 | * | G | 76 | C | 78 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GC*GUC | 4 |
| GC*GCAC | 2 |
| UU*ACGUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *U | 4 |
| *CA | 2 |
| *CGU | 1 |
- Annotations
-
- Single bulged U (4)
- Bulged stacked bases (2)
- Bulged stacked bases (H) (1)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.03 | Avg 0.41 | Max 0.90
Coloring options: