Motif IL_36612.3 Version IL_36612.3 of this group appears in releases 3.20 to 3.24

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2	break		3		4	1-4	2-3
1	IL_4V9F_095	4V9F	0.8610	3	Bulged stacked bases	0	LSU rRNA	U	2732	U	2733	*	A	2746	G	2750	cWW	cWW
2	IL_4WF9_076	4WF9	0.5656	2	Bulged stacked bases	X	LSU rRNA	G	1960	C	1961	*	G	1991	C	1994	cWW	cWW
3	IL_4Y4O_249	4Y4O	0.5249	2	Bulged stacked bases (H)	2A	LSU rRNA	G	1933	C	1934	*	G	1964	C	1967	cWW	cWW
4	IL_5FQ5_002	5FQ5	0.0000	1	Single bulged U	A	tracrRNA	G	54	C	55	*	G	58	C	60	cWW	cWW
5	IL_5B2T_002	5B2T	0.0611	1	Single bulged U	A	tracrRNA	G	54	C	55	*	G	58	C	60	cWW	cWW
6	IL_4ZT0_004	4ZT0	0.0709	1	Single bulged U	D	tracrRNA	G	54	C	55	*	G	58	C	60	cWW	cWW
7	IL_5F9R_003	5F9R	0.1050	1	Single bulged U	A	tracrRNA	G	72	C	73	*	G	76	C	78	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GC*GUC	4
GC*GCAC	2
UU*ACGUG	1

Non-Watson-Crick part of the motif

Sequence	Counts
*U	4
*CA	2
*CGU	1

Release history

Release	3.20	3.21	3.22	3.23	3.24
Date	2019-06-28	2019-07-26	2019-08-23	2019-09-19	2019-10-16
Status	Updated, 2 parents	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Single bulged U (4)
Bulged stacked bases (2)
Bulged stacked bases (H) (1)
Basepair signature: cWW-cWW
Heat map statistics: Min 0.03 | Avg 0.41 | Max 0.90

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Coloring options: Nucleotide numbers

Motif IL_36612.3 Version IL_36612.3 of this group appears in releases 3.20 to 3.24 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_36612.3 Version IL_36612.3 of this group appears in releases 3.20 to 3.24

Download

Csv

Json