Motif IL_36718.1 Version IL_36718.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_1GID_013 | 1GID | 0.3743 | 5 | B | P4-P6 RNA RIBOZYME DOMAIN | G | 134 | U | 135 | A | 136 | * | U | 182 | A | 187 | C | 189 | cWW | cWH | cWW | |
2 | IL_2R8S_005 | 2R8S | 0.3738 | 5 | cWH basepair with bulged bases | R | P4-P6 RNA RIBOZYME DOMAIN | G | 134 | U | 135 | A | 136 | * | U | 182 | A | 187 | C | 189 | cWW | cWH | cWW |
3 | IL_406D_004 | 406D | 0.3033 | 0 | A+E | RNA (17-mer) | U | 8||B | G | 9||B | G | 10||B | * | U | 25||B | G | 26||B | G | 27||B | cWW | cWH | cWW | |
4 | IL_4WF9_121 | 4WF9 | 0.0000 | 0 | Y | 5S rRNA | U | 3 | G | 4 | G | 5 | * | C | 110 | A | 111 | G | 112 | ncWWa | ncWH | cWW | |
5 | IL_5F5F_003 | 5F5F | 0.1800 | 0 | Isolated cWH basepair | F | RNA (20-mer) | G | 14 | G | 15 | A | 16 | * | U | 5 | G | 6 | C | 7 | cWW | cWH | cWW |
6 | IL_5F5F_001 | 5F5F | 0.1988 | 0 | Isolated cWH basepair | B | RNA (20-mer) | G | 14 | G | 15 | A | 16 | * | U | 5 | G | 6 | C | 7 | cWW | cWH | cWW |
7 | IL_3R1E_001 | 3R1E | 0.2140 | 0 | B+A | RNA (8-mer) | C | 5 | G | 6 | G | 7 | * | C | 2 | GRB | 3 | G | 4 | cWW | cWH | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GUA*UAAUAAGC | 2 |
GGA*UGC | 2 |
UGG*UGG | 1 |
UGG*CAG | 1 |
CGG*C(GRB)G | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
G*G | 3 |
U*AAUAAG | 2 |
G*A | 1 |
G*(GRB) | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Isolated cWH basepair (2)
- cWH basepair with bulged bases (1)
- Basepair signature
- cWW-cWH-cWW
- Heat map statistics
- Min 0.04 | Avg 0.28 | Max 0.51
Coloring options: