#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 5 61-62-53-4
1 IL_1GID_0131GID0.37435BP4-P6 RNA RIBOZYME DOMAING134U135A136*U182A187C189cWWcWHcWW
2 IL_2R8S_0052R8S0.37385cWH basepair with bulged basesRP4-P6 RNA RIBOZYME DOMAING134U135A136*U182A187C189cWWcWHcWW
3 IL_406D_004406D0.30330A+ERNA (17-mer)U8||BG9||BG10||B*U25||BG26||BG27||BcWWcWHcWW
4 IL_4WF9_1214WF90.00000Y 5S rRNAU3G4G5*C110A111G112ncWWancWHcWW
5 IL_5F5F_0035F5F0.18000Isolated cWH basepairFRNA (20-mer)G14G15A16*U5G6C7cWWcWHcWW
6 IL_5F5F_0015F5F0.19880Isolated cWH basepairBRNA (20-mer)G14G15A16*U5G6C7cWWcWHcWW
7 IL_3R1E_0013R1E0.21400B+ARNA (8-mer)C5G6G7*C2GRB3G4cWWcWHcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GUA*UAAUAAGC2
GGA*UGC2
UGG*UGG1
UGG*CAG1
CGG*C(GRB)G1
Non-Watson-Crick part of the motif
SequenceCounts
G*G3
U*AAUAAG2
G*A1
G*(GRB)1

Release history

Release3.88
Date2024-09-11
StatusNew id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (4)
  • Isolated cWH basepair (2)
  • cWH basepair with bulged bases (1)
  • Basepair signature
    cWW-cWH-cWW
    Heat map statistics
    Min 0.04 | Avg 0.28 | Max 0.51
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