Motif IL_36973.7 Version IL_36973.7 of this group appears in releases 3.88 to 3.89
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-13 | 3-11 | 5-10 | 6-9 | 7-8 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3PDR_011 | 3PDR | 0.5818 | 0 | X | M-box riboswitch (ykoK leader) | A | 60 | A | 61 | A | 62 | A | 63 | A | 64 | U | 65 | G | 66 | * | C | 75 | G | 76 | C | 77 | C | 78 | A | 79 | A | 80 | U | 81 | cWW | ntHS | ncWW | ncWW | cWW | |
| 2 | IL_4V9F_069 | 4V9F | 0.2438 | 0 | 0 | LSU rRNA | U | 1907 | G | 1908 | A | 1909 | A | 1910 | C | 1911 | A | 1912 | C | 1913 | * | G | 1926 | A | 1927 | C | 1928 | G | 1929 | A | 1930 | A | 1931 | G | 1932 | cWW | tSH | ncWw | cWW | ||
| 3 | IL_5TBW_088 | 5TBW | 0.0000 | 0 | 1 | LSU rRNA | U | 2211 | C | 2212 | A | 2213 | A | 2214 | A | 2215 | G | 2216 | U | 2217 | * | A | 2228 | A | 2229 | C | 2230 | C | 2231 | A | 2232 | A | 2233 | G | 2234 | cWW | tSH | cWW | cWW | ||
| 4 | IL_8C3A_093 | 8C3A | 0.1131 | 0 | 1 | LSU rRNA | U | 2189 | C | 2190 | A | 2191 | A | 2192 | A | 2193 | G | 2194 | U | 2195 | * | A | 2206 | A | 2207 | C | 2208 | C | 2209 | A | 2210 | A | 2211 | G | 2212 | cWW | ntSH | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UCAAAGU*AACCAAG | 2 |
| AAAAAUG*CGCCAAU | 1 |
| UGAACAC*GACGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAAAG*ACCAA | 2 |
| AAAAU*GCCAA | 1 |
| GAACA*ACGAA | 1 |
- Annotations
-
- (4)
- Basepair signature
- cWW-tSH-L-R-L-R-L-R-cWW-cWW
- Heat map statistics
- Min 0.11 | Avg 0.30 | Max 0.61
Coloring options: