Motif IL_37053.1 Version IL_37053.1 of this group appears in releases 0.6 to 1.14
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-10 | 4-7 | 4-9 | 6-7 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1S72_058 | 1S72 | 0.6008 | 1 | 0 | LSU rRNA | U | 1587 | G | 1588 | G | 1589 | A | 1590 | A | 1591 | G | 1592 | * | C | 1602 | A | 1603 | G | 1605 | A | 1606 | A | 1607 | G | 1608 | cWW | tSH | ntSH | tSs | ntHS | cWW | |
| 2 | IL_4A1B_077 | 4A1B | 0.0000 | 2 | 1 | 26S RRNA | U | 1735 | G | 1736 | A | 1737 | A | 1738 | A | 1739 | U | 1741 | * | A | 1751 | G | 1752 | G | 1754 | A | 1755 | U | 1756 | A | 1757 | cWW | tSH | ntSH | tSs | tHS | cWW | |
| 3 | IL_3U5H_081 | 3U5H | 0.4069 | 2 | 5 | 25S rRNA | C | 1711 | G | 1712 | G | 1713 | A | 1714 | A | 1715 | U | 1717 | * | G | 1727 | G | 1728 | G | 1730 | A | 1731 | U | 1732 | G | 1733 | cWW | tSH | tSs | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGGAAG*CAGGAAG | 1 |
| UGAAAUU*AGAGAUA | 1 |
| CGGAAUU*GGAGAUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGAA*AGGAA | 1 |
| GAAAU*GAGAU | 1 |
| GGAAU*GAGAU | 1 |
Release history
| Release | 0.6 | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2012-04-02 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_37053.1 | Only in the parent motif |
|---|---|---|---|
| IL_81728.1 Compare | IL_1S72_058 | IL_4A1B_077, IL_3U5H_081 |
Children motifs
| Child motif | Common motif instances | Only in IL_37053.1 | Only in the child motif |
|---|---|---|---|
| IL_37053.2 Compare | IL_4A1B_077, IL_1S72_058, IL_3U5H_081 | IL_4CUV_080 |
- Annotations
- Basepair signature
- cWW-tSH-tSH-tHS-tSS-L-R-cWW
- Heat map statistics
- Min 0.41 | Avg 0.36 | Max 0.63
Coloring options: