Motif IL_81728.1 Version IL_81728.1 of this group appears in releases 0.1 to 0.5
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-10 | 4-7 | 4-9 | 6-7 | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_1S72_058 | 1S72 | 0 | 1 | Kink-turn (H) | 0 | LSU rRNA | U | 1587 | G | 1588 | G | 1589 | A | 1590 | A | 1591 | G | 1592 | * | C | 1602 | A | 1603 | G | 1605 | A | 1606 | A | 1607 | G | 1608 | cWW | tSH | ntSH | tSs | ntHS | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
UGGAAG*CAGGAAG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GGAA*AGGAA | 1 |
Release history
Release | 0.1 | 0.2 | 0.3 | 0.4 | 0.5 |
---|---|---|---|---|---|
Date | 2011-12-08 | 2011-12-08 | 2011-12-08 | 2011-12-08 | 2011-12-08 |
Status | New id, no parents | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
Child motif | Common motif instances | Only in IL_81728.1 | Only in the child motif |
---|---|---|---|
IL_37053.1 Compare | IL_1S72_058 | IL_4A1B_077, IL_3U5H_081 |
- Annotations
-
- Kink-turn (H) (1)
- Basepair signature
- Heat map statistics
- Min 0.00 | Avg 0.00 | Max 0.00
Coloring options: