Motif IL_38958.3 Version IL_38958.3 of this group appears in releases 3.12 to 3.24

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3	break		4		5		6	1-6	2-5	3-4
1	IL_4IOA_077	4IOA	0.3058	1	Isolated tHS basepair with bulges	X	LSU rRNA	U	2064	A	2065	G	2066	*	C	2215	G	2216	G	2218	cWW	tHS	cWW
2	IL_4WF9_082	4WF9	0.2816	1	Isolated tHS basepair with bulges	X	LSU rRNA	U	2108	A	2109	G	2110	*	C	2263	G	2264	G	2266	cWW	tHS	cWW
3	IL_5TBW_095	5TBW	0.2895	1	Isolated tHS basepair with bulges	1	LSU rRNA	U	2423	A	2424	G	2425	*	U	2604	G	2605	G	2607	cWW	tHS	cWW
4	IL_5J7L_325	5J7L	0.2944	1	Isolated tHS basepair with bulges	DA	LSU rRNA	U	2081	A	2082	G	2083	*	U	2236	G	2237	G	2239	cWW	tHS	cWW
5	IL_4Y4O_189	4Y4O	0.2144	1	Isolated tHS basepair with bulges	2A	LSU rRNA	C	288	A	289	G	290	*	U	350	G	351	G	353	cWW	tHS	cWW
6	IL_4V9F_076	4V9F	0.1000	1	Isolated tHS basepair with bulges	0	LSU rRNA	C	2122	A	2123	G	2124	*	C	2269	G	2270	G	2272	cWW	tHS	cWW
7	IL_4Y4O_255	4Y4O	0.0000	1	Isolated tHS basepair with bulges	2A	LSU rRNA	C	2081	A	2082	G	2083	*	C	2236	G	2237	G	2239	cWW	tHS	cWW
8	IL_5TBW_099	5TBW	0.2116	2	Isolated tHS basepair with bulges	1	LSU rRNA	C	2666	A	2667	U	2668	*	A	2686	G	2687	G	2690	cWW	tHS	cWW
9	IL_4IOA_082	4IOA	0.2432	2	Isolated tHS basepair with bulges	X	LSU rRNA	C	2276	A	2277	A	2278	*	U	2296	G	2297	G	2300	cWW	ntHS	cWW
10	IL_4WF9_086	4WF9	0.2222	2	Isolated tHS basepair with bulges	X	LSU rRNA	C	2324	A	2325	G	2326	*	C	2344	A	2345	G	2348	cWW	tHS	cWW
11	IL_4V9F_080	4V9F	0.2908	2	Isolated tHS basepair with bulges	0	LSU rRNA	C	2331	A	2332	G	2333	*	C	2351	G	2352	G	2355	cWW	tHS	cWW
12	IL_4Y4O_263	4Y4O	0.5535	2	Isolated tHS basepair with bulges	2A	LSU rRNA	C	2297	A	2298	G	2299	*	C	2317	G	2318	G	2321	cWW		cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UAG*CGGG	2
UAG*UGGG	2
CAG*CGGG	2
CAG*UGGG	1
CAU*AGUAG	1
CAA*UGUAG	1
CAG*CAUAG	1
CAG*CGAAG	1
CAG*CGGAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
A*GG	7
A*GUA	2
A*AUA	1
A*GAA	1
A*GGA	1

Release history

Release	3.12	3.13	3.14	3.15	3.16	3.17	3.18	3.19	3.20	3.21	3.22	3.23	3.24
Date	2018-11-16	2018-12-14	2019-01-11	2019-02-08	2019-03-08	2019-04-05	2019-05-03	2019-05-31	2019-06-28	2019-07-26	2019-08-23	2019-09-19	2019-10-16
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Isolated tHS basepair with bulges (12)
Basepair signature: cWW-tHS-cWW
Heat map statistics: Min 0.10 | Avg 0.30 | Max 0.65

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