Motif IL_38958.5 Version IL_38958.5 of this group appears in releases 3.48 to 3.53
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4Y4O_263 | 4Y4O | 0.5535 | 2 | Isolated tHS basepair with bulges | 2A | LSU rRNA | C | 2297 | A | 2298 | G | 2299 | * | C | 2317 | G | 2318 | G | 2321 | cWW | cWW | |
| 2 | IL_4V9F_080 | 4V9F | 0.2908 | 2 | Isolated tHS basepair with bulges | 0 | LSU rRNA | C | 2331 | A | 2332 | G | 2333 | * | C | 2351 | G | 2352 | G | 2355 | cWW | tHS | cWW |
| 3 | IL_4WF9_086 | 4WF9 | 0.2222 | 2 | Isolated tHS basepair with bulges | X | LSU rRNA | C | 2324 | A | 2325 | G | 2326 | * | C | 2344 | A | 2345 | G | 2348 | cWW | tHS | cWW |
| 4 | IL_7A0S_080 | 7A0S | 0.2675 | 2 | Isolated tHS basepair with bulges | X | LSU rRNA | C | 2276 | A | 2277 | A | 2278 | * | U | 2296 | G | 2297 | G | 2300 | cWW | tHS | cWW |
| 5 | IL_5TBW_099 | 5TBW | 0.2116 | 2 | Isolated tHS basepair with bulges | 1 | LSU rRNA | C | 2666 | A | 2667 | U | 2668 | * | A | 2686 | G | 2687 | G | 2690 | cWW | tHS | cWW |
| 6 | IL_4Y4O_255 | 4Y4O | 0.0000 | 1 | Isolated tHS basepair with bulges | 2A | LSU rRNA | C | 2081 | A | 2082 | G | 2083 | * | C | 2236 | G | 2237 | G | 2239 | cWW | tHS | cWW |
| 7 | IL_4V9F_076 | 4V9F | 0.1000 | 1 | Isolated tHS basepair with bulges | 0 | LSU rRNA | C | 2122 | A | 2123 | G | 2124 | * | C | 2269 | G | 2270 | G | 2272 | cWW | tHS | cWW |
| 8 | IL_4Y4O_189 | 4Y4O | 0.2144 | 1 | Isolated tHS basepair with bulges | 2A | LSU rRNA | C | 288 | A | 289 | G | 290 | * | U | 350 | G | 351 | G | 353 | cWW | tHS | cWW |
| 9 | IL_5J7L_325 | 5J7L | 0.2944 | 1 | Isolated tHS basepair with bulges | DA | LSU rRNA | U | 2081 | A | 2082 | G | 2083 | * | U | 2236 | G | 2237 | G | 2239 | cWW | tHS | cWW |
| 10 | IL_5TBW_095 | 5TBW | 0.2895 | 1 | Isolated tHS basepair with bulges | 1 | LSU rRNA | U | 2423 | A | 2424 | G | 2425 | * | U | 2604 | G | 2605 | G | 2607 | cWW | tHS | cWW |
| 11 | IL_4WF9_082 | 4WF9 | 0.2816 | 1 | Isolated tHS basepair with bulges | X | LSU rRNA | U | 2108 | A | 2109 | G | 2110 | * | C | 2263 | G | 2264 | G | 2266 | cWW | tHS | cWW |
| 12 | IL_7A0S_077 | 7A0S | 0.2866 | 1 | Isolated tHS basepair with bulges | X | LSU rRNA | U | 2064 | A | 2065 | G | 2066 | * | C | 2215 | G | 2216 | G | 2218 | cWW | tHS | cWW |
| 13 | IL_1L9A_004 | 1L9A | 0.4274 | 0 | Isolated tHS basepair with bulges | B | signal recognition particle RNA S domain | U | 132 | A | 133 | U | 134 | * | A | 163 | G | 164 | G | 165 | cWW | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAG*CGGG | 2 |
| UAG*UGGG | 2 |
| UAG*CGGG | 2 |
| CAG*CGGAG | 1 |
| CAG*CGAAG | 1 |
| CAG*CAUAG | 1 |
| CAA*UGUAG | 1 |
| CAU*AGUAG | 1 |
| CAG*UGGG | 1 |
| UAU*AGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*GG | 7 |
| A*GUA | 2 |
| A*GGA | 1 |
| A*GAA | 1 |
| A*AUA | 1 |
| A*G | 1 |
- Annotations
-
- Isolated tHS basepair with bulges (13)
- Basepair signature
- cWW-tHS-cWW
- Heat map statistics
- Min 0.10 | Avg 0.32 | Max 0.75
Coloring options: