IL_39199.7

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2	break		3		4		5	1-4	1-5	2-3	3-5	4-5
1	IL_1VWW_102	1VWW	0.6421	4		5	LSU rRNA	C	2614	C	2615	*	G	2722	U	2723	G	2724		ncWW	cWW
2	IL_3SUX_002	3SUX	0.5206	0	Major groove platform	X	THF riboswitch	G	37	A	38	*	U	47	G	48	U	49		cWW	ncWW
3	IL_3Q1Q_001	3Q1Q	0.5062	0		B	RNase P class A	G	328	C	329	*	G	51	U	52	C	53		cWW	cWW		ncSH
4	IL_4QCN_105	4QCN	0.5387	0		A	LSU rRNA	G	2848	G	2849	*	U	2888	C	2889	C	2890		cWW	cWW
5	IL_4A1B_087	4A1B	0.5902	1		1	LSU rRNA	U	2195	G	2196	*	U	2236	A	2237	A	2239		cWW	cWW
6	IL_2QBG_001	2QBG	0.5164	0		A	5S rRNA	C	17	G	18	*	U	65	A	66	G	67		cWW	cWW
7	IL_4CUX_043	4CUX	0.4071	1		2	SSU rRNA	A	865	G	866	*	C	962	A	963	U	965		cWW	cWW
8	IL_1VWW_111	1VWW	0.4853	1		5	LSU rRNA	U	3840	C	3841	*	G	2847	G	2848	A	2850	tHS	cWW	cWW
9	IL_1S72_061	1S72	0.4251	1		0	LSU rRNA	U	2034	C	2035	*	G	1744	G	1745	A	1747	tHS	cWW	cWW
10	IL_1VW3_048	1VW3	0.4525	1		A	LSU rRNA	U	1893	C	1894	*	G	1618	G	1619	A	1621	tHS	cWW	cWW
11	IL_1VX6_085	1VX6	0.4656	1		A	LSU rRNA	U	2629	C	2630	*	G	2166	G	2167	A	2169	tHS	cWW	cWW
12	IL_3U5H_084	3U5H	0.4646	1		5	LSU rRNA	U	2336	C	2337	*	G	1898	G	1899	A	1901	tHS	cWW	cWW
13	IL_2QBG_064	2QBG	0.4679	1		B	LSU rRNA	U	1993	C	1994	*	G	1666	G	1667	A	1669	tHS	cWW	cWW
14	IL_4CUV_083	4CUV	0.5059	1		1	LSU rRNA	U	2336	C	2337	*	G	1898	G	1899	A	1901	tHS	cWW	cWW
15	IL_4A1B_080	4A1B	0.4738	1		1	LSU rRNA	U	2331	C	2332	*	G	1922	G	1923	A	1925	tHS	cWW	cWW
16	IL_1G1X_001	1G1X	0.4071	1	Major groove platform; stack outside cWW	D+E	16S RIBOSOMAL RNA	G	654	A	655	*	U	751	G	752	C	754	tHS	cWW	cWW		ncSH
17	IL_2AW7_034	2AW7	0.3954	1		A	SSU rRNA	G	654	A	655	*	U	751	G	752	C	754	tHS	cWW	cWW
18	IL_1FJG_027	1FJG	0.3920	1	Major groove platform; stack outside cWW (H)	A	SSU rRNA	G	654	A	655	*	U	751	G	752	C	754	tHS	cWW	cWW		ncSH
19	IL_1F7Y_001	1F7Y	0.4152	1		B	16S RIBOSOMAL RNA FRAGMENT	G	18	A	19	*	U	50	G	51	C	53	tHS	cWW	cWW		ncSH
20	IL_4QLM_004	4QLM	0.4397	1	Major groove platform; stack outside cWW	A	cyclic di-AMP riboswitch	G	39	G	40	*	C	91	G	92	C	94	tHS	cWW	cWW
21	IL_2QBG_049	2QBG	0.5038	1		B	LSU rRNA	A	1603	C	1604	*	G	1310	G	1311	U	1313	ntHS	cWW	cWW
22	IL_1FJG_024	1FJG	0.3024	0	Major groove platform (H)	A	SSU rRNA	G	644	C	645	*	G	594	G	595	C	596	ntHS	cWW	cWW		ncSH
23	IL_1QA6_002	1QA6	0.3939	1		C	LSU rRNA	U	151	C	152	*	G	137	A	139	A	140	ntHS	cWW	cWW		cSH
24	IL_3DIR_004	3DIR	0.3409	1		A	Lysine riboswitch	G	54	G	55	*	C	38	A	39	C	41		cWW	cWW
25	IL_2QBG_044	2QBG	0.3436	1		B	LSU rRNA	U	1101	C	1102	*	G	1087	A	1089	A	1090		cWW	cWW		ncSH
26	IL_1FJG_028	1FJG	0.2984	0	Major groove platform (H)	A	SSU rRNA	G	657	G	658	*	C	747	C	748	C	749		cWW	cWW		ncSH
27	IL_3NKB_002	3NKB	0.2863	0	Major groove platform	B	Hepatitis delta virus ribozyme	U	47	C	48	*	G	55	U	56	A	57		cWW	cWW		cSH
28	IL_4BPP_077	4BPP	0.3353	0		A	SSU rRNA	U	1469	C	1470	*	G	1479	U	1480	A	1481		cWW	cWW		ncSH
29	IL_1G1X_002	1G1X	0.2882	0	Major groove platform	D+E	16S RIBOSOMAL RNA	G	657	G	658	*	C	747	C	748	C	749		cWW	cWW		ncSH
30	IL_1VW3_073	1VW3	0.3497	0		A	LSU rRNA	G	2681	G	2682	*	C	2668	A	2669	C	2670		cWW	cWW
31	IL_4QCN_008	4QCN	0.2473	0		A	LSU rRNA	G	291	G	292	*	U	392	A	393	C	394		cWW	cWW		ncSH
32	IL_1XJR_002	1XJR	0.2362	0	Major groove platform	A	s2m RNA	G	13	G	14	*	U	37	A	38	C	39		cWW	cWW		cSH
33	IL_4IOA_084	4IOA	0.2174	0	Major groove platform	X	LSU rRNA	G	2393	G	2394	*	U	2380	A	2381	C	2382		cWW	cWW
34	IL_4QCN_087	4QCN	0.2606	0		A	LSU rRNA	G	2426	G	2427	*	U	2413	C	2414	C	2415		cWW	cWW		ncSH
35	IL_4A1B_106	4A1B	0.2664	0		1	LSU rRNA	G	2811	G	2812	*	U	2853	C	2854	C	2855		cWW	cWW		ncSH
36	IL_3U5H_108	3U5H	0.2799	0		5	LSU rRNA	G	2823	G	2824	*	U	2865	U	2866	C	2867		cWW	cWW	ncSH	cSH
37	IL_4CUV_112	4CUV	0.2742	0		1	LSU rRNA	G	2823	G	2824	*	U	2865	U	2866	C	2867		cWW	cWW	ncSH
38	IL_1VX6_109	1VX6	0.2580	0		A	LSU rRNA	G	3182	G	3183	*	U	3224	C	3225	C	3226		cWW	cWW
39	IL_4L81_002	4L81	0.1527	0		A	SAM-I-IV-variant	U	29	G	30	*	C	42	A	43	A	44	ntHS	cWW	cWW		ncSH
40	IL_1S03_008	1S03	0.1674	0	Major groove platform	B	47-MER	U	16	G	17	*	C	34	A	35	A	36	tHS	cWW	cWW		cSH
41	IL_1VW3_074	1VW3	0.1542	0		A	LSU rRNA	G	2720	G	2721	*	C	2762	A	2763	C	2764		cWW	cWW		cSH
42	IL_1S72_080	1S72	0.1174	0	Major groove platform (H)	0	LSU rRNA	G	2489	A	2490	*	U	2531	A	2532	C	2533		cWW	cWW		cSH
43	IL_4IOA_086	4IOA	0.0950	0	Major groove platform (H)	X	LSU rRNA	G	2433	G	2434	*	C	2475	A	2476	C	2477		cWW	cWW		ncSH
44	IL_4QCN_089	4QCN	0.0000	0		A	LSU rRNA	G	2466	G	2467	*	C	2508	A	2509	C	2510		cWW	cWW		cSH
45	IL_2QBG_091	2QBG	0.1122	0		B	LSU rRNA	G	2454	G	2455	*	C	2496	A	2497	C	2498		cWW	cWW		cSH
46	IL_3D0U_004	3D0U	0.1851	1	Major groove platform; stack outside cWW	A	Lysine riboswitch	G	51	G	52	*	C	35	A	36	C	38		cWW	cWW		cSH
47	IL_3OWZ_007	3OWZ	0.1719	0		B	Glycine riboswitch	G	35	G	36	*	C	68	U	69	C	70		cWW	cWW		cSH
48	IL_3OWZ_003	3OWZ	0.1691	0		A	Glycine riboswitch	G	35	G	36	*	C	68	U	69	C	70		cWW	cWW		cSH
49	IL_2QBG_025	2QBG	0.2805	0		B	LSU rRNA	G	757	C	758	*	G	738	A	739	C	740		cWW	cWW		cSH
50	IL_3P49_010	3P49	0.3125	0		A	Glycine riboswitch	G	113	G	114	*	C	140	U	141	C	142		cWW	cWW		ncSH
51	IL_3P49_007	3P49	0.3796	0		A	Glycine riboswitch	G	38	A	39	*	U	49	U	50	C	51		ncWW	cWW		ncSH
52	IL_4A1B_021	4A1B	0.3330	0		1	LSU rRNA	U	473	G	474	*	U	503	A	504	A	505		cWW	ncWW		ncSH
53	IL_4IOA_073	4IOA	0.2425	0	Major groove platform (H)	X	LSU rRNA	C	2596	G	2597	*	C	2033	A	2034	G	2035		cWW	cWW		cSH
54	IL_4QCN_074	4QCN	0.2579	0		A	LSU rRNA	C	2629	G	2630	*	C	2072	A	2073	G	2074		cWW	cWW		cSH
55	IL_2QBG_078	2QBG	0.2053	0		B	LSU rRNA	U	2617	G	2618	*	C	2050	A	2051	A	2052	tHS	cWW	cWW		cSH
56	IL_1VW3_062	1VW3	0.2162	0		A	LSU rRNA	U	2884	G	2885	*	C	1950	A	1951	A	1952	tHS	cWW	cWW		cSH
57	IL_4IOA_087	4IOA	0.2570	0		X	LSU rRNA	U	2472	G	2473	*	U	2436	G	2437	A	2438	ntHS	cWW	cWW
58	IL_1VW3_075	1VW3	0.2799	0		A	LSU rRNA	U	2759	G	2760	*	U	2723	A	2724	A	2725	tHS	cWW	cWW		cSH
59	IL_2AW7_031	2AW7	0.2464	0		A	SSU rRNA	U	644	G	645	*	U	594	A	595	A	596		cWW	cWW		ncSH
60	IL_1I6U_003	1I6U	0.2502	0		D	16S RRNA FRAGMENT	U	28	G	29	*	U	9	A	10	A	11	ntHS	cWW	cWW		cSH
61	IL_4A1B_108	4A1B	0.4365	0		1	LSU rRNA	U	2850	G	2851	*	U	2814	U	2815	G	2816		cWW	cWW
62	IL_4CUV_114	4CUV	0.4694	0		1	LSU rRNA	U	2862	G	2863	*	U	2826	U	2827	G	2828		cWW	cWW
63	IL_1VX6_111	1VX6	0.4725	0		A	LSU rRNA	U	3221	G	3222	*	U	3185	U	3186	G	3187		cWW	cWW
64	IL_2QBG_092	2QBG	0.6368	0		B	LSU rRNA	U	2493	G	2494	*	U	2457	G	2458	A	2459		cWW	cWW
65	IL_4CUV_117	4CUV	0.6700	0		1	LSU rRNA	C	2876	G	2877	*	U	2949	G	2950	G	2951		cWW	cWW
66	IL_4A1B_111	4A1B	0.6502	0		1	LSU rRNA	C	2864	G	2865	*	U	2937	G	2938	G	2939		cWW	cWW
67	IL_1VX6_114	1VX6	0.6604	0		A	LSU rRNA	C	3235	G	3236	*	U	3308	G	3309	G	3310		cWW	cWW
68	IL_2QBG_095	2QBG	0.6564	0		B	LSU rRNA	C	2507	G	2508	*	U	2580	G	2581	G	2582		cWW	cWW		chH
69	IL_4IOA_090	4IOA	0.6407	0	Major groove platform (H)	X	LSU rRNA	C	2486	G	2487	*	U	2559	G	2560	G	2561		cWW	cWW		chH
70	IL_1VX6_075	1VX6	0.6465	0		A	LSU rRNA	C	1823	A	1824	*	U	2001	G	2002	G	2003		cWW	cWW		chH

3D structures

Complete motif including flanking bases

Sequence	Counts
UC*GGAA	7
GG*CAC	5
CG*UGG	5
GG*UCC	4
GA*UGAC	4
UG*CAA	4
UG*UAA	4
GG*UAC	3
GG*CUC	3
UG*UUG	3
UC*GAAA	2
GG*CAUC	2
GG*CCC	2
UC*GUA	2
GG*UUC	2
CG*CAG	2
UG*UGA	2
GGUCC*GUCC	1
GA*UGU	1
GC*GUC	1
UG*UAAA	1
CG*UAG	1
AG*CAUU	1
UUG*CUG	1
GG*CGUC	1
AC*GGUU	1
GC*GGC	1
GA*UAC	1
GC*GAC	1
GA*UUC	1
CA*UGG	1

Non-Watson-Crick part of the motif

Sequence	Counts
*A	21
*U	12
*GA	11
*G	10
*C	6
*AA	3
*AU	3
*GU	2
GUC*UC	1
U*U	1

Release history

Release	1.17
Date	2014-09-04
Status	Updated, 1 parent

Parent motifs

Parent motif	Common motif instances	Only in IL_39199.7	Only in the parent motif
IL_39199.6 Compare	IL_2QBG_091, IL_1VW3_048, IL_1FJG_028, IL_4IOA_084, IL_1FJG_027, IL_1FJG_024, IL_1S72_080, IL_4L81_002, IL_4IOA_073, IL_1S72_061, IL_2AW7_031, IL_3NKB_002, IL_2AW7_034, IL_3U5H_108, IL_2QBG_001, IL_2QBG_025, IL_2QBG_044, IL_1VW3_062, IL_3D0U_004, IL_1G1X_002, IL_1G1X_001, IL_2QBG_049, IL_2QBG_064, IL_3U5H_084, IL_3P49_007, IL_4CUV_117, IL_4A1B_087, IL_4A1B_080, IL_4BPP_077, IL_1XJR_002, IL_4IOA_087, IL_2QBG_092, IL_2QBG_095, IL_4CUV_112, IL_4IOA_086, IL_3Q1Q_001, IL_4A1B_021, IL_4A1B_111, IL_1I6U_003, IL_4A1B_108, IL_1QA6_002, IL_1VW3_073, IL_4A1B_106, IL_3DIR_004, IL_1VW3_074, IL_1VW3_075, IL_4CUV_114, IL_2QBG_078, IL_4CUV_083, IL_1S03_008, IL_4CUX_043, IL_1F7Y_001, IL_3OWZ_007, IL_3P49_010, IL_3OWZ_003, IL_4IOA_090, IL_3SUX_002	IL_1VX6_114, IL_4QCN_008, IL_4QCN_074, IL_1VX6_111, IL_4QCN_087, IL_4QCN_089, IL_1VX6_075, IL_1VWW_102, IL_1VX6_109, IL_4QCN_105, IL_4QLM_004, IL_1VWW_111, IL_1VX6_085	IL_4NVV_008, IL_4NVV_066, IL_4NVV_086, IL_4NVV_088, IL_4NVV_078

Children motifs

Child motif	Common motif instances	Only in IL_39199.7	Only in the child motif
IL_39199.8 Compare	IL_1VX6_114, IL_3P49_010, IL_2QBG_049, IL_1VX6_111, IL_1FJG_028, IL_1XJR_002, IL_1FJG_027, IL_1FJG_024, IL_4L81_002, IL_4IOA_073, IL_1S72_061, IL_2AW7_031, IL_3NKB_002, IL_2AW7_034, IL_3U5H_108, IL_2QBG_001, IL_2QBG_025, IL_4QCN_008, IL_4CUV_083, IL_3U5H_084, IL_2QBG_044, IL_1VW3_062, IL_3D0U_004, IL_1G1X_002, IL_1G1X_001, IL_1VW3_048, IL_2QBG_064, IL_1VX6_109, IL_1VX6_085, IL_4QCN_105, IL_3Q1Q_001, IL_4CUV_117, IL_4A1B_087, IL_4A1B_080, IL_4BPP_077, IL_4IOA_084, IL_4IOA_087, IL_2QBG_092, IL_2QBG_095, IL_4QCN_087, IL_4CUV_112, IL_4IOA_086, IL_4QCN_089, IL_4A1B_021, IL_1I6U_003, IL_2QBG_078, IL_4A1B_108, IL_1QA6_002, IL_4QLM_004, IL_1VW3_073, IL_4A1B_106, IL_3DIR_004, IL_1VW3_074, IL_1VW3_075, IL_4CUV_114, IL_2QBG_091, IL_3P49_007, IL_4QCN_074, IL_4CUX_043, IL_1F7Y_001, IL_3OWZ_007, IL_4A1B_111, IL_3OWZ_003, IL_1S72_080, IL_4IOA_090, IL_3SUX_002, IL_1VX6_075, IL_1S03_008	IL_1VWW_102, IL_1VWW_111	IL_4W21_136, IL_4W21_141, IL_4W21_138, IL_4W21_108, IL_4W23_018, IL_4W21_100

Motif IL_39199.7 Version IL_39199.7 of this group appears in releases 1.17 to 1.17 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_39199.7 Version IL_39199.7 of this group appears in releases 1.17 to 1.17

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