Motif IL_39212.2 Version IL_39212.2 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 1-9 | 2-8 | 3-7 | 4-8 | 5-8 | 6-7 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1S72_059 | 1S72 | 0.2577 | 1 | 0 | G | 1728 | A | 1729 | C | 1731 | A | 1732 | A | 1733 | C | 1734 | * | G | 2045 | G | 2046 | C | 2047 | cWW | tHS | cWW | |||
| 2 | IL_2QBG_062 | 2QBG | 0.1006 | 0 | B | G | 1651 | A | 1652 | G | 1653 | A | 1654 | A | 1655 | C | 1656 | * | G | 2004 | A | 2005 | C | 2006 | cWW | tHS | cWW | |||
| 3 | IL_4QCN_060 | 4QCN | 0.0000 | 0 | A | G | 1698 | A | 1699 | G | 1700 | A | 1701 | A | 1702 | C | 1703 | * | G | 2026 | A | 2027 | C | 2028 | cWW | tHS | cWW | |||
| 4 | IL_4IOA_062 | 4IOA | 0.0705 | 0 | X | G | 1668 | A | 1669 | G | 1670 | A | 1671 | A | 1672 | C | 1673 | * | G | 1987 | A | 1988 | C | 1989 | cWW | tHS | cWW | |||
| 5 | IL_1VW3_046 | 1VW3 | 0.1611 | 0 | A | G | 1603 | A | 1604 | U | 1605 | A | 1606 | A | 1607 | U | 1608 | * | A | 1904 | G | 1905 | C | 1906 | cWW | tHS | cWW | |||
| 6 | IL_1VX6_083 | 1VX6 | 0.2179 | 0 | A | A | 2151 | A | 2152 | A | 2153 | A | 2154 | A | 2155 | A | 2156 | * | U | 2640 | A | 2641 | U | 2642 | cWW | tHS | cWW | |||
| 7 | IL_4CUX_049 | 4CUX | 0.3869 | 0 | 2 | G | 985 | G | 986 | G | 987 | A | 988 | U | 989 | C | 990 | * | G | 1014 | U | 1015 | C | 1016 | cWW | ncWw | cWW | |||
| 8 | IL_4W21_151 | 4W21 | 0.7538 | 2 | 5 | A | 4624 | C | 4625 | A | 4626 | U | 4627 | U | 4628 | U | 4629 | * | A | 4669 | A | 4672 | U | 4673 | cWW | cWW | tHH | ntHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAGAAC*GAC | 3 |
| GAGCAAC*GGC | 1 |
| GAUAAU*AGC | 1 |
| AAAAAA*UAU | 1 |
| GGGAUC*GUC | 1 |
| ACAUUU*ACCAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGAA*A | 3 |
| AGCAA*G | 1 |
| AUAA*G | 1 |
| AAAA*A | 1 |
| GGAU*U | 1 |
| CAUU*CCA | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-07 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_39212.2 | Only in the parent motif |
|---|---|---|---|
| IL_39212.1 Compare | IL_1VW3_046, IL_2QBG_062, IL_4QCN_060, IL_1S72_059, IL_4IOA_062, IL_1VX6_083, IL_4CUX_049 | IL_4W21_151 | IL_1VWW_145 |
Children motifs
This motif has no children motifs.- Annotations
-
- (8)
- Basepair signature
- cWW-L-L-L-tHS-cWW
- Heat map statistics
- Min 0.07 | Avg 0.34 | Max 0.80
Coloring options: