Motif IL_39526.4 Version IL_39526.4 of this group appears in releases 1.0 to 1.18
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 1-9 | 7-8 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_3P59_001 | 3P59 | 0.5598 | 0 | A+B | RNA (15-mer) + RNA (10-mer) | G | 52 | A | 53 | A | 54 | C | 55 | U | 56 | A | 57 | C | 58 | * | G | 110 | C | 111 | cWW | cWW |
2 | IL_2NOK_001 | 2NOK | 0.0000 | 0 | A+B | RNA (24-mer) + RNA (20-mer) | G | 52 | A | 53 | A | 54 | C | 55 | U | 56 | A | 57 | C | 58 | * | G | 110 | C | 111 | cWW | cWW |
3 | IL_2NOK_005 | 2NOK | 0.2247 | 0 | C+D | RNA (24-mer) + RNA (20-mer) | G | 52 | A | 53 | A | 54 | C | 55 | U | 56 | A | 57 | C | 58 | * | G | 110 | C | 111 | cWW | cWW |
4 | IL_2PN4_002 | 2PN4 | 0.4755 | 0 | A+B | RNA (24-mer) + RNA (20-mer) | G | 52 | A | 53 | A | 54 | C | 55 | U | 56 | A | 57 | C | 58 | * | G | 110 | C | 111 | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GAACUAC*GC | 4 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
AACUA* | 4 |
Release history
Release | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 | 1.15 | 1.17 | 1.18 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Date | 2013-03-04 | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 | 2014-06-20 | 2014-09-04 | 2014-10-07 |
Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
Parent motif | Common motif instances | Only in IL_39526.4 | Only in the parent motif |
---|---|---|---|
IL_39526.3 Compare | IL_2PN4_002, IL_2NOK_005, IL_2NOK_001 | IL_3P59_001 | IL_2QBZ_001 |
IL_76256.1 Compare | IL_3P59_001 | IL_2PN4_002, IL_2NOK_005, IL_2NOK_001 |
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-L-L-L-L-L-cWW
- Heat map statistics
- Min 0.22 | Avg 0.39 | Max 0.80
Coloring options: