Motif IL_40562.1 Version IL_40562.1 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 4-7 | 5-6 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V9F_020 | 4V9F | 0.4082 | 1 | AAA cross-strand stack | 0 | LSU rRNA | C | 663 | U | 664 | A | 665 | A | 666 | C | 667 | * | G | 679 | G | 680 | A | 682 | G | 683 | cWW | ntWH | tHS | cWW |
| 2 | IL_5J7L_258 | 5J7L | 0.3935 | 1 | AAA cross-strand stack | DA | LSU rRNA | U | 606 | U | 607 | A | 608 | A | 609 | C | 610 | * | G | 618 | G | 619 | A | 621 | G | 622 | cWW | ntWH | tHS | cWW |
| 3 | IL_7RQB_016 | 7RQB | 0.3906 | 1 | AAA cross-strand stack | 1A | LSU rRNA | U | 606 | U | 607 | A | 608 | A | 609 | G | 610 | * | C | 618 | G | 619 | A | 621 | G | 622 | cWW | ntWH | tHS | cWW |
| 4 | IL_7A0S_013 | 7A0S | 0.4956 | 1 | AAA cross-strand stack | X | LSU rRNA | U | 616 | U | 617 | A | 618 | A | 619 | G | 620 | * | C | 629 | G | 630 | A | 632 | G | 633 | cWW | tHS | cWW | |
| 5 | IL_4WF9_019 | 4WF9 | 0.3885 | 1 | AAA cross-strand stack | X | LSU rRNA | U | 649 | U | 650 | A | 651 | A | 652 | G | 653 | * | U | 663 | G | 664 | A | 666 | G | 667 | cWW | ntWW | tHS | cWW |
| 6 | IL_2R8S_006 | 2R8S | 0.3247 | 1 | UAA/GAN variation | R | P4-P6 RNA RIBOZYME DOMAIN | C | 216 | C | 217 | A | 218 | A | 219 | G | 220 | * | U | 253 | G | 254 | A | 256 | G | 257 | cWW | tSH | tHS | cWW |
| 7 | IL_5TBW_118 | 5TBW | 0.3876 | 2 | UAA/GAN related | 1 | LSU rRNA | C | 3084 | G | 3085 | A | 3086 | A | 3087 | G | 3088 | * | U | 3054 | U | 3055 | U | 3057 | G | 3059 | cWW | ntSW | cWW | |
| 8 | IL_4V9F_094 | 4V9F | 0.0000 | 1 | UAA/GAN | 0 | LSU rRNA | G | 2754 | G | 2755 | U | 2756 | A | 2757 | G | 2758 | * | U | 2724 | G | 2725 | A | 2727 | C | 2728 | cWW | tHS | cWW | |
| 9 | IL_7RQB_060 | 7RQB | 0.2482 | 0 | UAA/GAN | 1A | LSU rRNA | A | 1469 | G | 1470 | A | 1471 | A | 1472 | G | 1473 | * | U | 1518 | G | 1519 | G | 1520 | U | 1523 | cWW | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUAAG*CGGAG | 2 |
| CUAAC*GGGAG | 1 |
| UUAAC*GGGAG | 1 |
| UUAAG*UGGAG | 1 |
| CCAAG*UGCAG | 1 |
| CGAAG*UUUUUG | 1 |
| GGUAG*UGUAC | 1 |
| AGAAG*UGGU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAA*GGA | 5 |
| CAA*GCA | 1 |
| GAA*UUUU | 1 |
| GUA*GUA | 1 |
| GAA*GG | 1 |
- Annotations
-
- AAA cross-strand stack (5)
- UAA/GAN (2)
- UAA/GAN variation (1)
- UAA/GAN related (1)
- Basepair signature
- cWW-L-R-L-tHS-cWW
- Heat map statistics
- Min 0.11 | Avg 0.32 | Max 0.64
Coloring options: