Motif IL_41366.1 Version IL_41366.1 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 3-9 | 3-10 | 4-7 | 4-9 | 5-8 | 6-7 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4BPP_010 | 4BPP | 0.2895 | 0 | A | 18S RRNA | U | 113 | U | 114 | A | 115 | U | 116 | U | 117 | U | 118 | * | A | 286 | U | 287 | C | 288 | U | 289 | A | 290 | cWW | cwW | ntHS | cWw | cWW | |||
| 2 | IL_4CUX_010 | 4CUX | 0.2075 | 0 | 2 | 18S RRNA | U | 117 | U | 118 | A | 119 | U | 120 | U | 121 | U | 122 | * | A | 295 | U | 296 | U | 297 | C | 298 | A | 299 | cWW | ncBW | ncWw | cWW | ||||
| 3 | IL_3U5F_010 | 3U5F | 0.0000 | 0 | 6 | 18S rRNA | U | 117 | U | 118 | A | 119 | U | 120 | U | 121 | U | 122 | * | A | 295 | U | 296 | U | 297 | C | 298 | A | 299 | cWW | ntHS | cWw | cWw | cWW | |||
| 4 | IL_4W23_010 | 4W23 | 0.2718 | 0 | 2 | 18S ribosomal RNA | U | 116 | C | 117 | C | 118 | U | 119 | U | 120 | U | 121 | * | A | 343 | U | 344 | U | 345 | C | 346 | G | 347 | cWW | ncWw | ncWW | |||||
| 5 | IL_4W21_039 | 4W21 | 0.5252 | 0 | 5 | 28S ribosomal RNA | U | 750 | G | 751 | G | 752 | C | 753 | U | 754 | C | 755 | * | G | 908 | A | 909 | G | 910 | U | 911 | G | 912 | ncWW | ncWB | ncBW | ncWW | ||||
| 6 | IL_4A1B_014 | 4A1B | 0.9358 | 1 | 1 | 26S RRNA | G | 430 | A | 431 | G | 432 | A | 434 | A | 435 | U | 436 | * | A | 646 | U | 647 | G | 648 | G | 649 | C | 650 | cWW | ncWW | ntSH | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUAUUU*AUUCA | 2 |
| UUAUUU*AUCUA | 1 |
| UCCUUU*AUUCG | 1 |
| UGGCUC*GAGUG | 1 |
| GAGCAAU*AUGGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAUU*UUC | 2 |
| UAUU*UCU | 1 |
| CCUU*UUC | 1 |
| GGCU*AGU | 1 |
| AGCAA*UGG | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-07 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_41366.1 | Only in the parent motif |
|---|---|---|---|
| IL_38078.1 Compare | IL_3U5F_010, IL_4A1B_014, IL_4BPP_010, IL_4CUX_010 | IL_4W23_010, IL_4W21_039 | IL_1VWW_072, IL_1VWW_044, IL_1VX2_010, IL_1VWW_042, IL_1VWW_028 |
Children motifs
This motif has no children motifs.- Annotations
-
- (6)
- Basepair signature
- cWW-cWW-L-R-L-cWW-cWW
- Heat map statistics
- Min 0.21 | Avg 0.47 | Max 0.99
Coloring options: