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Motif IL_42622.1 Version IL_42622.1 of this group appears in releases 3.77 to 3.79

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2 3break 4 51-21-52-53-4
1 IL_3IWN_0013IWN0.39870Minor groove platformACyclic di-GMP-I riboswitchG89A90U91*A2C3ncWWcWW
2 IL_3K0J_0023K0J0.35580Minor groove platform relatedETPP riboswitch (THI element)C18C19U20*A35G36ncSHcWWcWW
3 IL_7TZS_0037TZS0.31900Minor groove platform relatedXTPP riboswitch (THI element)C23C24U25*A35G36ncSHcWWcWW
4 IL_5J7L_0645J7L0.50850Single bulged AAA SSU rRNAU1440A1441G1442*C1460G1461cWWcWW
5 IL_7A0S_0037A0S0.39320Minor groove platformX LSU rRNAU447C448C449*G42A43cSHcWWcWW
6 IL_7RQB_0037RQB0.40310Minor groove platform1A LSU rRNAU434C435C436*G42A43cSHcWWcWW
7 IL_5J7L_2475J7L0.25810Minor groove platformDA LSU rRNAU434C435C436*G43A44cSHcWWcWW
8 IL_5T83_0035T830.30580Minor groove platformAGuanidine-I riboswitchC36U37G38*C21G22ncSHcWWntHScWW
9 IL_7MLW_0047MLW0.32820Minor groove platformFGuanidine-I riboswitchC45U46G47*C16G17ncSHcWWtHScWW
10 IL_6DLR_0036DLR0.26530Minor groove platformAGuanidine-I riboswitchC39U40G41*C21G22cSHcWWtHScWW
11 IL_5TBW_0395TBW0.31400Minor groove platform1 LSU rRNAU1050U1051U1052*A997A998ncSHcWWtHScWW
12 IL_4V88_4124V880.45680Minor groove platformA6 SSU rRNAA518C519A520*U532U533cWWntHScWW
13 IL_2QWY_0092QWY0.32490Minor groove platformCSAM-II riboswitchU40A41G42*C23A24cWWtHScWW
14 IL_5ML7_0095ML70.40750Minor groove platformB23S ribosomal RNAC2177A2178G2179*C2201G2202cWWtHScWW
15 IL_6DTD_0036DTD0.37550Minor groove platformCRNA (37-MER)G22A23A24*U15C16cSHcWWtHScWW
16 IL_1U6B_0071U6B0.41580Minor groove platformB197-MERG128A129G130*C177C178cSHcWWtHScWW
17 IL_4V88_4454V880.57500Minor groove platformA6 SSU rRNAC1459A1460C1461*G1178G1179cWWcWW
18 IL_5J7L_0425J7L0.33970Minor groove platformAA SSU rRNAC1226A1227C1228*G953G954cWWntHScWW
19 IL_4LFB_0384LFB0.29550Minor groove platformA SSU rRNAC1226A1227C1228*G953G954cWWntHScWW
20 IL_7A0S_0287A0S0.14090Minor groove platformX LSU rRNAU925C926C927*G875A876ncSHcWWcWW
21 IL_4V9F_0344V9F0.07180Minor groove platform0 LSU rRNAU1009C1010C1011*G956A957cSHcWWcWW
22 IL_7RQB_0287RQB0.00000Minor groove platform1A LSU rRNAU913C914C915*G862A863cSHcWWcWW
23 IL_4WF9_0324WF90.09240Minor groove platformX LSU rRNAU958C959C960*G907A908cSHcWWcWW
24 IL_5J7L_3245J7L0.26211Minor groove platformDA LSU rRNAU2438C2440U2441*A2070A2071cSHcWWcWW
25 IL_4V9F_0754V9F0.28521Minor groove platform0 LSU rRNAU2473C2475C2476*G2111A2112cSHcWWcWW
26 IL_4WF9_0814WF90.29331Minor groove platformX LSU rRNAU2465C2467C2468*G2097A2098cSHcWWcWW
27 IL_7RQB_0817RQB0.29021Minor groove platform1A LSU rRNAU2438C2440C2441*G2070A2071cSHcWWcWW
28 IL_5TBW_0945TBW0.28181Minor groove platform1 LSU rRNAU2807C2809C2810*G2412A2413cSHcWWcWW
29 IL_7A0S_0767A0S0.30531Minor groove platformX LSU rRNAU2417C2419C2420*G2053A2054cSHcWWcWW
30 IL_3IGI_0053IGI0.66812Multiple bulged basesAGroup II catalytic intron D1-D4-3U234G236U238*G128G129cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
UCC*GA7
UACC*GA5
CUG*CG3
CAC*GG3
CCU*AG2
GAU*AC1
UAG*CG1
UUU*AA1
ACA*UU1
UAG*CA1
CAG*CG1
GAA*UC1
GAG*CC1
UACU*AA1
UUGAU*GG1
Non-Watson-Crick part of the motif
SequenceCounts
C*10
A*9
AC*6
U*4
UGA*1

Release history

Release3.773.783.79
Date2023-12-062024-01-032024-01-03
StatusNew id, 2 parentsExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Minor groove platform (26)
  • Minor groove platform related (2)
  • Multiple bulged bases (1)
  • Single bulged A (1)
    • Basepair signature
    cWW-L-cWW
    Heat map statistics
    Min 0.06 | Avg 0.39 | Max 0.94
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