Motif IL_42622.6 Version IL_42622.6 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 1-2 | 1-5 | 2-5 | 3-4 | |||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_3IWN_001 | 3IWN | 0.3562 | 0 | Minor groove platform | A | C-di-GMP riboswitch | G | 89 | A | 90 | U | 91 | * | A | 2 | C | 3 | ncWW | cWW | ||
2 | IL_7A0S_003 | 7A0S | 0.4057 | 0 | Minor groove platform | X | LSU rRNA | U | 447 | C | 448 | C | 449 | * | G | 42 | A | 43 | cSH | cWW | cWW | |
3 | IL_8VTW_003 | 8VTW | 0.4208 | 0 | Minor groove platform (H) | 1A | LSU rRNA | U | 434 | C | 435 | C | 436 | * | G | 42 | A | 43 | cSH | cWW | cWW | |
4 | IL_5J7L_247 | 5J7L | 0.2664 | 0 | Minor groove platform | DA | LSU rRNA | U | 434 | C | 435 | C | 436 | * | G | 43 | A | 44 | cSH | cWW | cWW | |
5 | IL_5T83_003 | 5T83 | 0.3110 | 0 | Minor groove platform | A | Guanidine-I riboswitch | C | 36 | U | 37 | G | 38 | * | C | 21 | G | 22 | ncSH | cWW | ntHS | cWW |
6 | IL_7MLW_004 | 7MLW | 0.3021 | 0 | F | Guanidine-I riboswitch | C | 45 | U | 46 | G | 47 | * | C | 16 | G | 17 | ncSH | cWW | tHS | cWW | |
7 | IL_6DLR_003 | 6DLR | 0.2583 | 0 | Minor groove platform | A | Guanidine-I riboswitch | C | 39 | U | 40 | G | 41 | * | C | 21 | G | 22 | cSH | cWW | tHS | cWW |
8 | IL_8C3A_042 | 8C3A | 0.2798 | 0 | Minor groove platform (H) | 1 | LSU rRNA | U | 1046 | U | 1047 | U | 1048 | * | A | 993 | A | 994 | ncSH | cWW | ntHS | cWW |
9 | IL_5TBW_039 | 5TBW | 0.3303 | 0 | Minor groove platform | 1 | LSU rRNA | U | 1050 | U | 1051 | U | 1052 | * | A | 997 | A | 998 | ncSH | cWW | tHS | cWW |
10 | IL_2QWY_009 | 2QWY | 0.2960 | 0 | Minor groove platform | C | SAM-II riboswitch | U | 40 | A | 41 | G | 42 | * | C | 23 | A | 24 | cWW | tHS | cWW | |
11 | IL_5ML7_009 | 5ML7 | 0.3388 | 0 | Minor groove platform | B | 23S ribosomal RNA | C | 2177 | A | 2178 | G | 2179 | * | C | 2201 | G | 2202 | cWW | tHS | cWW | |
12 | IL_6DTD_003 | 6DTD | 0.3163 | 0 | Minor groove platform | C | RNA (37-MER) | G | 22 | A | 23 | A | 24 | * | U | 15 | C | 16 | cSH | cWW | tHS | cWW |
13 | IL_1U6B_007 | 1U6B | 0.3398 | 0 | Minor groove platform | B | 197-MER | G | 128 | A | 129 | G | 130 | * | C | 177 | C | 178 | cSH | cWW | tHS | cWW |
14 | IL_5J7L_042 | 5J7L | 0.2446 | 0 | Minor groove platform | AA | SSU rRNA | C | 1226 | A | 1227 | C | 1228 | * | G | 953 | G | 954 | cWW | ntHS | cWW | |
15 | IL_4LFB_038 | 4LFB | 0.2112 | 0 | Minor groove platform | A | SSU rRNA | C | 1226 | A | 1227 | C | 1228 | * | G | 953 | G | 954 | cWW | ntHS | cWW | |
16 | IL_8C3A_017 | 8C3A | 0.1977 | 1 | 1 | LSU rRNA | C | 439 | U | 440 | G | 442 | * | C | 487 | G | 488 | cSH | cWW | tHS | cWW | |
17 | IL_4V9F_034 | 4V9F | 0.1029 | 0 | Minor groove platform | 0 | LSU rRNA | U | 1009 | C | 1010 | C | 1011 | * | G | 956 | A | 957 | cSH | cWW | cWW | |
18 | IL_8VTW_027 | 8VTW | 0.1321 | 0 | Minor groove platform (H) | 1A | LSU rRNA | U | 913 | C | 914 | C | 915 | * | G | 862 | A | 863 | cSH | cWW | cWW | |
19 | IL_4WF9_032 | 4WF9 | 0.1245 | 0 | Minor groove platform | X | LSU rRNA | U | 958 | C | 959 | C | 960 | * | G | 907 | A | 908 | cSH | cWW | cWW | |
20 | IL_7A0S_028 | 7A0S | 0.0000 | 0 | Minor groove platform | X | LSU rRNA | U | 925 | C | 926 | C | 927 | * | G | 875 | A | 876 | ncSH | cWW | cWW | |
21 | IL_8C3A_099 | 8C3A | 0.1491 | 1 | Minor groove platform (H) | 1 | LSU rRNA | U | 2779 | C | 2781 | C | 2782 | * | G | 2390 | A | 2391 | cSH | cWW | cWW | |
22 | IL_7A0S_076 | 7A0S | 0.2425 | 1 | Minor groove platform | X | LSU rRNA | U | 2417 | C | 2419 | C | 2420 | * | G | 2053 | A | 2054 | cSH | cWW | cWW | |
23 | IL_5TBW_094 | 5TBW | 0.2243 | 1 | Minor groove platform | 1 | LSU rRNA | U | 2807 | C | 2809 | C | 2810 | * | G | 2412 | A | 2413 | cSH | cWW | cWW | |
24 | IL_8VTW_080 | 8VTW | 0.2444 | 1 | Minor groove platform (H) | 1A | LSU rRNA | U | 2438 | C | 2440 | C | 2441 | * | G | 2070 | A | 2071 | cSH | cWW | cWW | |
25 | IL_4WF9_081 | 4WF9 | 0.2482 | 1 | Minor groove platform | X | LSU rRNA | U | 2465 | C | 2467 | C | 2468 | * | G | 2097 | A | 2098 | cSH | cWW | cWW | |
26 | IL_4V9F_075 | 4V9F | 0.2260 | 1 | Minor groove platform | 0 | LSU rRNA | U | 2473 | C | 2475 | C | 2476 | * | G | 2111 | A | 2112 | cSH | cWW | cWW | |
27 | IL_5J7L_324 | 5J7L | 0.2118 | 1 | Minor groove platform | DA | LSU rRNA | U | 2438 | C | 2440 | U | 2441 | * | A | 2070 | A | 2071 | cSH | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
UCC*GA | 7 |
UACC*GA | 6 |
CUG*CG | 3 |
UUU*AA | 2 |
CAC*GG | 2 |
GAU*AC | 1 |
UAG*CA | 1 |
CAG*CG | 1 |
GAA*UC | 1 |
GAG*CC | 1 |
CUUG*CG | 1 |
UACU*AA | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
A* | 7 |
C* | 7 |
AC* | 7 |
U* | 5 |
UU* | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Minor groove platform (20)
- Minor groove platform (H) (5)
- (2)
- Basepair signature
- cWW-cSH-cWW
- Heat map statistics
- Min 0.06 | Avg 0.32 | Max 0.59
Coloring options: