#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 51-21-52-53-4
1 IL_3IWN_0013IWN0.35620Minor groove platformAC-di-GMP riboswitchG89A90U91*A2C3ncWWcWW
2 IL_7A0S_0037A0S0.40570Minor groove platformX LSU rRNAU447C448C449*G42A43cSHcWWcWW
3 IL_8VTW_0038VTW0.42080Minor groove platform (H)1A LSU rRNAU434C435C436*G42A43cSHcWWcWW
4 IL_5J7L_2475J7L0.26640Minor groove platformDA LSU rRNAU434C435C436*G43A44cSHcWWcWW
5 IL_5T83_0035T830.31100Minor groove platformAGuanidine-I riboswitchC36U37G38*C21G22ncSHcWWntHScWW
6 IL_7MLW_0047MLW0.30210FGuanidine-I riboswitchC45U46G47*C16G17ncSHcWWtHScWW
7 IL_6DLR_0036DLR0.25830Minor groove platformAGuanidine-I riboswitchC39U40G41*C21G22cSHcWWtHScWW
8 IL_8C3A_0428C3A0.27980Minor groove platform (H)1 LSU rRNAU1046U1047U1048*A993A994ncSHcWWntHScWW
9 IL_5TBW_0395TBW0.33030Minor groove platform1 LSU rRNAU1050U1051U1052*A997A998ncSHcWWtHScWW
10 IL_2QWY_0092QWY0.29600Minor groove platformCSAM-II riboswitchU40A41G42*C23A24cWWtHScWW
11 IL_5ML7_0095ML70.33880Minor groove platformB23S ribosomal RNAC2177A2178G2179*C2201G2202cWWtHScWW
12 IL_6DTD_0036DTD0.31630Minor groove platformCRNA (37-MER)G22A23A24*U15C16cSHcWWtHScWW
13 IL_1U6B_0071U6B0.33980Minor groove platformB197-MERG128A129G130*C177C178cSHcWWtHScWW
14 IL_5J7L_0425J7L0.24460Minor groove platformAA SSU rRNAC1226A1227C1228*G953G954cWWntHScWW
15 IL_4LFB_0384LFB0.21120Minor groove platformA SSU rRNAC1226A1227C1228*G953G954cWWntHScWW
16 IL_8C3A_0178C3A0.197711 LSU rRNAC439U440G442*C487G488cSHcWWtHScWW
17 IL_4V9F_0344V9F0.10290Minor groove platform0 LSU rRNAU1009C1010C1011*G956A957cSHcWWcWW
18 IL_8VTW_0278VTW0.13210Minor groove platform (H)1A LSU rRNAU913C914C915*G862A863cSHcWWcWW
19 IL_4WF9_0324WF90.12450Minor groove platformX LSU rRNAU958C959C960*G907A908cSHcWWcWW
20 IL_7A0S_0287A0S0.00000Minor groove platformX LSU rRNAU925C926C927*G875A876ncSHcWWcWW
21 IL_8C3A_0998C3A0.14911Minor groove platform (H)1 LSU rRNAU2779C2781C2782*G2390A2391cSHcWWcWW
22 IL_7A0S_0767A0S0.24251Minor groove platformX LSU rRNAU2417C2419C2420*G2053A2054cSHcWWcWW
23 IL_5TBW_0945TBW0.22431Minor groove platform1 LSU rRNAU2807C2809C2810*G2412A2413cSHcWWcWW
24 IL_8VTW_0808VTW0.24441Minor groove platform (H)1A LSU rRNAU2438C2440C2441*G2070A2071cSHcWWcWW
25 IL_4WF9_0814WF90.24821Minor groove platformX LSU rRNAU2465C2467C2468*G2097A2098cSHcWWcWW
26 IL_4V9F_0754V9F0.22601Minor groove platform0 LSU rRNAU2473C2475C2476*G2111A2112cSHcWWcWW
27 IL_5J7L_3245J7L0.21181Minor groove platformDA LSU rRNAU2438C2440U2441*A2070A2071cSHcWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
UCC*GA7
UACC*GA6
CUG*CG3
UUU*AA2
CAC*GG2
GAU*AC1
UAG*CA1
CAG*CG1
GAA*UC1
GAG*CC1
CUUG*CG1
UACU*AA1
Non-Watson-Crick part of the motif
SequenceCounts
A*7
C*7
AC*7
U*5
UU*1

Release history

Release3.88
Date2024-09-11
StatusUpdated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Minor groove platform (20)
  • Minor groove platform (H) (5)
  • (2)
  • Basepair signature
    cWW-cSH-cWW
    Heat map statistics
    Min 0.06 | Avg 0.32 | Max 0.59
    Help

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